cpantestlogs/Chemistry::File::MDLMol_genfailure.log
2017-05-02 18:44:36 -07:00

267 lines
11 KiB
Text

perl-blead
==========
cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
Work directory is /home/ryan/.cpanm/work/1493282308.32154
You have make /usr/bin/make
You have LWP 6.26
You have /bin/tar: tar (GNU tar) 1.29
Copyright (C) 2015 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Written by John Gilmore and Jay Fenlason.
You have /usr/bin/unzip
Searching Chemistry::File::MDLMol () on cpanmetadb ...
Unpacking Chemistry-File-MDLMol-0.21.tar.gz
--> Working on Chemistry::File::MDLMol
Fetching http://www.cpan.org/authors/id/I/IT/ITUB/Chemistry-File-MDLMol-0.21.tar.gz ... OK
Chemistry-File-MDLMol-0.21/
Chemistry-File-MDLMol-0.21/META.yml
Chemistry-File-MDLMol-0.21/MANIFEST
Chemistry-File-MDLMol-0.21/Makefile.PL
Chemistry-File-MDLMol-0.21/README
Chemistry-File-MDLMol-0.21/t/
Chemistry-File-MDLMol-0.21/t/sdf.t
Chemistry-File-MDLMol-0.21/t/rw.sdf
Chemistry-File-MDLMol-0.21/t/pod.t
Chemistry-File-MDLMol-0.21/t/1.sdf
Chemistry-File-MDLMol-0.21/t/mol/
Chemistry-File-MDLMol-0.21/t/mol/fluoroethylene.mol
Chemistry-File-MDLMol-0.21/t/mol/C5H5Cl2I.mol
Chemistry-File-MDLMol-0.21/t/mol/bromobenzene.mol
Chemistry-File-MDLMol-0.21/t/mol/N2F2.mol
Chemistry-File-MDLMol-0.21/t/mol/chg_rad.mol
Chemistry-File-MDLMol-0.21/t/pattern.t
Chemistry-File-MDLMol-0.21/t/mdlmol.t
Chemistry-File-MDLMol-0.21/t/pat/
Chemistry-File-MDLMol-0.21/t/pat/bromobenzene.mol
Chemistry-File-MDLMol-0.21/t/pat/query.mol
Chemistry-File-MDLMol-0.21/Changes
Chemistry-File-MDLMol-0.21/SDF.pm
Chemistry-File-MDLMol-0.21/MDLMol.pm
Entering Chemistry-File-MDLMol-0.21
Checking configure dependencies from META.yml
Running Makefile.PL
Configuring Chemistry-File-MDLMol-0.21 ... Warning: prerequisite Chemistry::Mol 0.35 not found.
Warning: prerequisite Chemistry::Ring 0.19 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Chemistry::File::MDLMol
Writing MYMETA.yml and MYMETA.json
Checking dependencies from MYMETA.json ...
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
Checking if you have Chemistry::Ring 0.19 ... No
Checking if you have Chemistry::Mol 0.35 ... No
Searching Chemistry::Ring (0.19) on cpanmetadb ...
Unpacking Chemistry-Ring-0.20.tar.gz
OK
==> Found dependencies: Chemistry::Ring, Chemistry::Mol
--> Working on Chemistry::Ring
Fetching http://www.cpan.org/authors/id/I/IT/ITUB/Chemistry-Ring-0.20.tar.gz ... OK
Chemistry-Ring-0.20/
Chemistry-Ring-0.20/META.yml
Chemistry-Ring-0.20/MANIFEST
Chemistry-Ring-0.20/lib/
Chemistry-Ring-0.20/lib/Chemistry/
Chemistry-Ring-0.20/lib/Chemistry/Ring.pm
Chemistry-Ring-0.20/lib/Chemistry/Ring/
Chemistry-Ring-0.20/lib/Chemistry/Ring/Find.pm
Chemistry-Ring-0.20/Makefile.PL
Chemistry-Ring-0.20/README
Chemistry-Ring-0.20/t/
Chemistry-Ring-0.20/t/ring.t
Chemistry-Ring-0.20/t/pod.t
Chemistry-Ring-0.20/t/rings/
Chemistry-Ring-0.20/t/rings/byciclic.ring
Chemistry-Ring-0.20/t/rings/contained2.ring
Chemistry-Ring-0.20/t/rings/cyclopentadiene.ring
Chemistry-Ring-0.20/t/rings/benzene_kekule.ring
Chemistry-Ring-0.20/t/rings/pyrrole.ring
Chemistry-Ring-0.20/t/rings/contained.ring
Chemistry-Ring-0.20/t/rings/byciclic_bond.ring
Chemistry-Ring-0.20/t/rings/mirror.ring
Chemistry-Ring-0.20/t/rings/cyclobutadiene.ring
Chemistry-Ring-0.20/t/rings/byciclic_bond2.ring
Chemistry-Ring-0.20/t/rings/cycloheptatriene.ring
Chemistry-Ring-0.20/t/rings/furan.ring
Chemistry-Ring-0.20/t/rings/pyridine.ring
Chemistry-Ring-0.20/t/rings2/
Chemistry-Ring-0.20/t/rings2/norbornane.ring
Chemistry-Ring-0.20/t/rings2/biphenyl.ring
Chemistry-Ring-0.20/t/rings2/cubane.ring
Chemistry-Ring-0.20/t/rings2/cubane_sssr.ring
Chemistry-Ring-0.20/t/rings2/disconnected.ring
Chemistry-Ring-0.20/t/ring_find.t
Chemistry-Ring-0.20/t/find_ring.t
Chemistry-Ring-0.20/t/find_rings.t
Chemistry-Ring-0.20/t/mem.t
Chemistry-Ring-0.20/Changes
Chemistry-Ring-0.20/MANIFEST.SKIP
Entering Chemistry-Ring-0.20
Checking configure dependencies from META.yml
Running Makefile.PL
Configuring Chemistry-Ring-0.20 ... Warning: prerequisite Chemistry::Mol 0.24 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Chemistry::Ring
Writing MYMETA.yml and MYMETA.json
Checking dependencies from MYMETA.json ...
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
Checking if you have Statistics::Regression 0.15 ... Yes (0.53)
Checking if you have Chemistry::Mol 0.24 ... No
Searching Chemistry::Mol (0.24) on cpanmetadb ...
Unpacking Chemistry-Mol-0.37.tar.gz
OK
==> Found dependencies: Chemistry::Mol
--> Working on Chemistry::Mol
Fetching http://www.cpan.org/authors/id/I/IT/ITUB/Chemistry-Mol-0.37.tar.gz ... OK
Chemistry-Mol-0.37/
Chemistry-Mol-0.37/META.yml
Chemistry-Mol-0.37/MANIFEST
Chemistry-Mol-0.37/Mol.pm
Chemistry-Mol-0.37/Bond.pm
Chemistry-Mol-0.37/Makefile.PL
Chemistry-Mol-0.37/Obj.pm
Chemistry-Mol-0.37/README
Chemistry-Mol-0.37/t/
Chemistry-Mol-0.37/t/change_id.t
Chemistry-Mol-0.37/t/Bond.t
Chemistry-Mol-0.37/t/compat.t
Chemistry-Mol-0.37/t/Obj.t
Chemistry-Mol-0.37/t/list.txt
Chemistry-Mol-0.37/t/descriptor.t
Chemistry-Mol-0.37/t/Atom.t
Chemistry-Mol-0.37/t/empty.mol
Chemistry-Mol-0.37/t/File.t
Chemistry-Mol-0.37/t/pod.t
Chemistry-Mol-0.37/t/Mol.t
Chemistry-Mol-0.37/t/safe_clone.t
Chemistry-Mol-0.37/t/geom.t
Chemistry-Mol-0.37/t/mol.pl
Chemistry-Mol-0.37/t/delete.t
Chemistry-Mol-0.37/t/mol.pl.gz
Chemistry-Mol-0.37/t/graph.t
Chemistry-Mol-0.37/t/add_implicit_h.t
Chemistry-Mol-0.37/t/Formula.t
Chemistry-Mol-0.37/t/mem.t
Chemistry-Mol-0.37/t/Dumper.t
Chemistry-Mol-0.37/t/exception.t
Chemistry-Mol-0.37/t/zlib.t
Chemistry-Mol-0.37/Tutorial.pod
Chemistry-Mol-0.37/File/
Chemistry-Mol-0.37/File/Dumper.pm
Chemistry-Mol-0.37/File/Formula.pm
Chemistry-Mol-0.37/Changes
Chemistry-Mol-0.37/formula_tests.txt
Chemistry-Mol-0.37/File.pm
Chemistry-Mol-0.37/Atom.pm
Entering Chemistry-Mol-0.37
Checking configure dependencies from META.yml
Running Makefile.PL
Configuring Chemistry-Mol-0.37 ... Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Chemistry::Mol
Writing MYMETA.yml and MYMETA.json
Checking dependencies from MYMETA.json ...
Checking if you have Scalar::Util 1.01 ... Yes (1.47)
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
Checking if you have Math::VectorReal 1 ... Yes (1.0)
Checking if you have Test::Simple 0 ... Yes (1.302078)
Checking if you have Text::Balanced 0 ... Yes (2.03)
OK
Building and testing Chemistry-Mol-0.37 ... cp File.pm blib/lib/Chemistry/File.pm
cp Tutorial.pod blib/lib/Chemistry/Tutorial.pod
cp File/Dumper.pm blib/lib/Chemistry/File/Dumper.pm
cp Mol.pm blib/lib/Chemistry/Mol.pm
cp Obj.pm blib/lib/Chemistry/Obj.pm
cp Bond.pm blib/lib/Chemistry/Bond.pm
cp Atom.pm blib/lib/Chemistry/Atom.pm
cp File/Formula.pm blib/lib/Chemistry/File/Formula.pm
Manifying 8 pod documents
PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/add_implicit_h.t .. ok
t/Atom.t ............ ok
Unescaped left brace in regex is illegal here in regex; marked by <-- HERE in m/(?<!\\)%j{ <-- HERE (.*?)}/ at /home/ryan/.cpanm/work/1493282308.32154/Chemistry-Mol-0.37/blib/lib/Chemistry/File/Formula.pm line 203.
Compilation failed in require at t/Bond.t line 5.
BEGIN failed--compilation aborted at t/Bond.t line 5.
t/Bond.t ............
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/change_id.t ....... ok
t/compat.t .......... ok
t/delete.t .......... ok
t/descriptor.t ...... ok
t/Dumper.t .......... ok
t/exception.t ....... ok
t/File.t ............ ok
# Failed test 'use Chemistry::File::Formula;'
# at t/Formula.t line 10.
# Tried to use 'Chemistry::File::Formula'.
# Error: Unescaped left brace in regex is illegal here in regex; marked by <-- HERE in m/(?<!\\)%j{ <-- HERE (.*?)}/ at /home/ryan/.cpanm/work/1493282308.32154/Chemistry-Mol-0.37/blib/lib/Chemistry/File/Formula.pm line 203.
# Compilation failed in require at t/Formula.t line 10.
# BEGIN failed--compilation aborted at t/Formula.t line 10.
No class installed for type 'formula' at t/Formula.t line 13.
# Looks like your test exited with 255 just after 1.
t/Formula.t .........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 18/18 subtests
t/geom.t ............ ok
Unescaped left brace in regex is illegal here in regex; marked by <-- HERE in m/(?<!\\)%j{ <-- HERE (.*?)}/ at /home/ryan/.cpanm/work/1493282308.32154/Chemistry-Mol-0.37/blib/lib/Chemistry/File/Formula.pm line 203.
Compilation failed in require at /home/ryan/.cpanm/work/1493282308.32154/Chemistry-Mol-0.37/blib/lib/Chemistry/Mol.pm line 724.
# Looks like your test exited with 255 just after 3.
t/graph.t ...........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/11 subtests
t/mem.t ............. ok
t/Mol.t ............. ok
t/Obj.t ............. ok
t/pod.t ............. ok
t/safe_clone.t ...... ok
t/zlib.t ............ ok
Test Summary Report
-------------------
t/Bond.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/Formula.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 18 tests but ran 1.
t/graph.t (Wstat: 65280 Tests: 3 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 11 tests but ran 3.
Files=19, Tests=200, 1 wallclock secs ( 0.04 usr 0.00 sys + 0.78 cusr 0.03 csys = 0.85 CPU)
Result: FAIL
Failed 3/19 test programs. 1/200 subtests failed.
Makefile:873: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
! Installing Chemistry::Mol failed. See /home/ryan/.cpanm/work/1493282308.32154/build.log for details. Retry with --force to force install it.
! Installing the dependencies failed: Module 'Chemistry::Mol' is not installed
! Bailing out the installation for Chemistry-Ring-0.20.
Already tried Chemistry::Mol. Skipping.
! Installing the dependencies failed: Module 'Chemistry::Ring' is not installed, Module 'Chemistry::Mol' is not installed
! Bailing out the installation for Chemistry-File-MDLMol-0.21.
FAIL
Command [cpanm --reinstall --verbose Chemistry::File::MDLMol] terminated with exit code 1 ($? = 256) under the following perl environment:
Command terminated with non-zero status.
Current perl:
Name: perl-blead
Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
Compiled at: Mar 30 2017 03:10:09
perlbrew:
version: 0.78
ENV:
PERLBREW_ROOT: /home/ryan/perl5/perlbrew
PERLBREW_HOME: /home/ryan/.perlbrew
PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man