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cpantestlogs/Bundle::GMOD_genfailure.log
ryan 4fe8bf59aa Second run of tests
2017-05-02 18:44:36 -07:00

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perl-blead
==========
cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
Work directory is /home/ryan/.cpanm/work/1493661251.7676
You have make /usr/bin/make
You have LWP 6.26
You have /bin/tar: tar (GNU tar) 1.29
Copyright (C) 2015 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Written by John Gilmore and Jay Fenlason.
You have /usr/bin/unzip
Searching Bundle::GMOD () on cpanmetadb ...
Unpacking Bundle-GMOD-1.0.tar.gz
--> Working on Bundle::GMOD
Fetching http://www.cpan.org/authors/id/S/SC/SCAIN/Bundle-GMOD-1.0.tar.gz ... OK
Bundle-GMOD-1.0/
Bundle-GMOD-1.0/README
Bundle-GMOD-1.0/MANIFEST
Bundle-GMOD-1.0/META.yml
Bundle-GMOD-1.0/lib/
Bundle-GMOD-1.0/lib/Bundle/
Bundle-GMOD-1.0/lib/Bundle/GMOD.pm
Bundle-GMOD-1.0/Makefile.PL
Entering Bundle-GMOD-1.0
Checking configure dependencies from META.yml
Running Makefile.PL
Configuring Bundle-GMOD-1.0 ... Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bundle::GMOD
Writing MYMETA.yml and MYMETA.json
Checking dependencies from MYMETA.json ...
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
Checking if you have URI::Escape ... Yes (3.31)
Checking if you have Pod::Usage ... Yes (1.69)
Checking if you have Config::General ... Yes (2.63)
Checking if you have DBI ... Yes (1.636)
Checking if you have DBD::Pg ... Yes (3.5.3)
Checking if you have Digest::MD5 ... Yes (2.55)
Checking if you have Module::Build ... Yes (0.4222)
Checking if you have Class::DBI ... Yes (3.0.17)
Checking if you have Class::DBI::Pg ... Yes (0.08)
Checking if you have Class::DBI::Pager ... Yes (0.08)
Checking if you have Class::DBI::View ... No
Checking if you have XML::Simple ... Yes (2.22)
Checking if you have LWP ... Yes (6.26)
Checking if you have Template ... Yes (2.27)
Checking if you have Log::Log4perl ... Yes (1.47)
Checking if you have XML::Parser::PerlSAX ... Yes (0.08)
Checking if you have XML::DOM ... Yes (1.46)
Checking if you have File::Path ... Yes (2.12)
Checking if you have Text::Tabs ... Yes (2013.0523)
Checking if you have File::Spec ... Yes (3.62)
Checking if you have XML::Writer ... Yes (0.625)
Checking if you have Graph ... Yes (0.9704)
Checking if you have DBIx::DBStag ... No
Checking if you have GO::Parser ... No
Checking if you have XML::LibXSLT ... Yes (1.95)
Checking if you have Ima::DBI ... Yes (0.35)
Checking if you have Class::MethodMaker ... Yes (2.24)
Checking if you have URI ... Yes (1.71)
Checking if you have LWP::Simple ... Yes (6.26)
Checking if you have XML::Twig ... Yes (3.52)
Checking if you have Tie::UrlEncoder ... Yes (0.02)
Checking if you have HTML::TreeBuilder ... Yes (5.04)
Checking if you have Time::HiRes ... Yes (1.9741)
Checking if you have File::NFSLock ... Yes (1.27)
Checking if you have Class::Data::Inheritable ... Yes (0.08)
Checking if you have IO::Dir ... Yes (1.10)
Checking if you have Text::Wrap ... Yes (2013.0523)
Searching Class::DBI::View () on cpanmetadb ...
Unpacking Class-DBI-View-0.07.tar.gz
OK
==> Found dependencies: Class::DBI::View, DBIx::DBStag, GO::Parser
--> Working on Class::DBI::View
Fetching http://www.cpan.org/authors/id/M/MI/MIYAGAWA/Class-DBI-View-0.07.tar.gz ... OK
Class-DBI-View-0.07/
Class-DBI-View-0.07/t/
Class-DBI-View-0.07/t/lib/
Class-DBI-View-0.07/t/lib/CD/
Class-DBI-View-0.07/t/lib/CD/mysql.pm
Class-DBI-View-0.07/t/lib/CD/Music.pm
Class-DBI-View-0.07/t/lib/CD/Tester.pm
Class-DBI-View-0.07/t/lib/CD/SQLite.pm
Class-DBI-View-0.07/t/01_temptable.t
Class-DBI-View-0.07/t/00_compile.t
Class-DBI-View-0.07/t/02_subquery.t
Class-DBI-View-0.07/t/03_having.t
Class-DBI-View-0.07/lib/
Class-DBI-View-0.07/lib/Class/
Class-DBI-View-0.07/lib/Class/DBI/
Class-DBI-View-0.07/lib/Class/DBI/View/
Class-DBI-View-0.07/lib/Class/DBI/View/TemporaryTable.pm
Class-DBI-View-0.07/lib/Class/DBI/View/Having.pm
Class-DBI-View-0.07/lib/Class/DBI/View/SubQuery.pm
Class-DBI-View-0.07/lib/Class/DBI/View.pm
Class-DBI-View-0.07/Changes
Class-DBI-View-0.07/MANIFEST
Class-DBI-View-0.07/README
Class-DBI-View-0.07/Makefile.PL
Class-DBI-View-0.07/META.yml
Entering Class-DBI-View-0.07
Checking configure dependencies from META.yml
Running Makefile.PL
Configuring Class-DBI-View-0.07 ... Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Class::DBI::View
Writing MYMETA.yml and MYMETA.json
Checking dependencies from MYMETA.json ...
Checking if you have Class::DBI 0.94 ... Yes (3.0.17)
Checking if you have Test::More 0.32 ... Yes (1.302083)
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
Checking if you have UNIVERSAL::require 0 ... Yes (0.18)
OK
Building and testing Class-DBI-View-0.07 ... cp lib/Class/DBI/View.pm blib/lib/Class/DBI/View.pm
cp lib/Class/DBI/View/Having.pm blib/lib/Class/DBI/View/Having.pm
cp lib/Class/DBI/View/SubQuery.pm blib/lib/Class/DBI/View/SubQuery.pm
cp lib/Class/DBI/View/TemporaryTable.pm blib/lib/Class/DBI/View/TemporaryTable.pm
Manifying 4 pod documents
PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00_compile.t .... ok
DBI connect('test','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2 "No such file or directory") at t/lib/CD/Tester.pm line 12.
t/01_temptable.t .. skipped: no mysql
DBD::SQLite::db do failed: no such table: music at t/lib/CD/Music.pm line 55.
END failed--call queue aborted.
# Looks like your test exited with 2 just after 12.
t/02_subquery.t ...
Dubious, test returned 2 (wstat 512, 0x200)
All 12 subtests passed
DBI connect('test','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2 "No such file or directory") at t/lib/CD/Tester.pm line 12.
t/03_having.t ..... skipped: no mysql
Test Summary Report
-------------------
t/02_subquery.t (Wstat: 512 Tests: 12 Failed: 0)
Non-zero exit status: 2
Files=4, Tests=13, 1 wallclock secs ( 0.01 usr 0.00 sys + 0.13 cusr 0.00 csys = 0.14 CPU)
Result: FAIL
Failed 1/4 test programs. 0/13 subtests failed.
Makefile:854: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
! Installing Class::DBI::View failed. See /home/ryan/.cpanm/work/1493661251.7676/build.log for details. Retry with --force to force install it.
Searching DBIx::DBStag () on cpanmetadb ...
Unpacking DBIx-DBStag-0.12.tar.gz
FAIL
--> Working on DBIx::DBStag
Fetching http://www.cpan.org/authors/id/S/SC/SCAIN/DBIx-DBStag-0.12.tar.gz ... OK
DBIx-DBStag-0.12/
DBIx-DBStag-0.12/cgi-bin/
DBIx-DBStag-0.12/cgi-bin/ubiq.cgi
DBIx-DBStag-0.12/Changes
DBIx-DBStag-0.12/DBIx/
DBIx-DBStag-0.12/DBIx/DBStag/
DBIx-DBStag-0.12/DBIx/DBStag/Constraint.pm
DBIx-DBStag-0.12/DBIx/DBStag/Cookbook.pm
DBIx-DBStag-0.12/DBIx/DBStag/SQLTemplate.pm
DBIx-DBStag-0.12/DBIx/DBStag.pm
DBIx-DBStag-0.12/example_templates/
DBIx-DBStag-0.12/example_templates/cia-country.stg
DBIx-DBStag-0.12/example_templates/spy-agent.stg
DBIx-DBStag-0.12/INSTALL
DBIx-DBStag-0.12/Makefile.PL
DBIx-DBStag-0.12/MANIFEST
DBIx-DBStag-0.12/META.yml
DBIx-DBStag-0.12/README
DBIx-DBStag-0.12/scripts/
DBIx-DBStag-0.12/scripts/selectall_html.pl
DBIx-DBStag-0.12/scripts/selectall_xml.pl
DBIx-DBStag-0.12/scripts/stag-autoddl.pl
DBIx-DBStag-0.12/scripts/stag-autotemplate.pl
DBIx-DBStag-0.12/scripts/stag-bulkload.pl
DBIx-DBStag-0.12/scripts/stag-check-resources.pl
DBIx-DBStag-0.12/scripts/stag-connect-parameters.pl
DBIx-DBStag-0.12/scripts/stag-ir.pl
DBIx-DBStag-0.12/scripts/stag-pgslurp.pl
DBIx-DBStag-0.12/scripts/stag-qsh
DBIx-DBStag-0.12/scripts/stag-show-template.pl
DBIx-DBStag-0.12/scripts/stag-sl2sql.pl
DBIx-DBStag-0.12/scripts/stag-storenode.pl
DBIx-DBStag-0.12/scripts/stag-template2bin.pl
DBIx-DBStag-0.12/scripts/stag-templates2scripts.pl
DBIx-DBStag-0.12/scripts/ubiq
DBIx-DBStag-0.12/t/
DBIx-DBStag-0.12/t/autoddl.t
DBIx-DBStag-0.12/t/bond.t
DBIx-DBStag-0.12/t/cvterm.t
DBIx-DBStag-0.12/t/data/
DBIx-DBStag-0.12/t/data/bond.el
DBIx-DBStag-0.12/t/data/CG10833.with-macros.chado-xml
DBIx-DBStag-0.12/t/data/chado-cvterm.sql
DBIx-DBStag-0.12/t/data/chado-feature.sql
DBIx-DBStag-0.12/t/data/chado-fr.sql
DBIx-DBStag-0.12/t/data/chado-pub.sql
DBIx-DBStag-0.12/t/data/game.el
DBIx-DBStag-0.12/t/data/mset.xml
DBIx-DBStag-0.12/t/data/parts-data.xml
DBIx-DBStag-0.12/t/data/parts-schema.sql
DBIx-DBStag-0.12/t/data/relationship.chado-xml
DBIx-DBStag-0.12/t/data/sofa.chado-xml
DBIx-DBStag-0.12/t/data/test.chadoxml
DBIx-DBStag-0.12/t/data/test2.chadoxml
DBIx-DBStag-0.12/t/DBStagTest.pm
DBIx-DBStag-0.12/t/feature.t
DBIx-DBStag-0.12/t/load-go.x
DBIx-DBStag-0.12/t/movie.x
DBIx-DBStag-0.12/t/norm2.t
DBIx-DBStag-0.12/t/norm3.t
DBIx-DBStag-0.12/t/normalize.t
DBIx-DBStag-0.12/t/parsesql.t
DBIx-DBStag-0.12/t/sql.x
DBIx-DBStag-0.12/t/store1.t
DBIx-DBStag-0.12/t/store2.t
DBIx-DBStag-0.12/t/store2b.t
DBIx-DBStag-0.12/t/store3.t
DBIx-DBStag-0.12/t/store4.t
DBIx-DBStag-0.12/t/store5.t
DBIx-DBStag-0.12/t/template1.x
DBIx-DBStag-0.12/t/tstore2.x
DBIx-DBStag-0.12/t/xort-style.t
Entering DBIx-DBStag-0.12
Checking configure dependencies from META.yml
Checking if you have ExtUtils::MakeMaker 6.58 ... Yes (7.24)
Running Makefile.PL
Configuring DBIx-DBStag-0.12 ... I will use the following settings for compiling and testing:
testdriver (default) = Pg
testdsn (default) = dbi:Pg:dbname=test
testhost (default) =
testpassword (default) =
testrecreate (default) = dropdb test; createdb test
testuser (default) =
To change these settings, see 'perl Makefile.PL --help'.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for DBIx
Writing MYMETA.yml and MYMETA.json
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
===================================
** WARNING **
Could not connect using these parameters; test suite will probably fail
Died at DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
Checking dependencies from MYMETA.json ...
Checking if you have DBIx::DBSchema 0.34 ... Yes (0.40)
Checking if you have Parse::RecDescent 0 ... Yes (1.967015)
Checking if you have XML::Parser::PerlSAX 0 ... Yes (0.08)
Checking if you have Data::Stag 0.07 ... Yes (0.14)
Checking if you have Text::Balanced 0 ... Yes (2.03)
Checking if you have DBI 0 ... Yes (1.636)
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
OK
Building and testing DBIx-DBStag-0.12 ... cp DBIx/DBStag/Cookbook.pm blib/lib/DBIx/DBStag/Cookbook.pm
cp DBIx/DBStag/Constraint.pm blib/lib/DBIx/DBStag/Constraint.pm
cp DBIx/DBStag/SQLTemplate.pm blib/lib/DBIx/DBStag/SQLTemplate.pm
cp DBIx/DBStag.pm blib/lib/DBIx/DBStag.pm
cp scripts/selectall_html.pl blib/script/selectall_html.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/selectall_html.pl
cp scripts/selectall_xml.pl blib/script/selectall_xml.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/selectall_xml.pl
cp scripts/stag-autoddl.pl blib/script/stag-autoddl.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-autoddl.pl
cp scripts/stag-autotemplate.pl blib/script/stag-autotemplate.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-autotemplate.pl
cp scripts/stag-ir.pl blib/script/stag-ir.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-ir.pl
cp scripts/stag-qsh blib/script/stag-qsh
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-qsh
cp scripts/stag-storenode.pl blib/script/stag-storenode.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-storenode.pl
cp scripts/stag-template2bin.pl blib/script/stag-template2bin.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-template2bin.pl
cp cgi-bin/ubiq.cgi blib/script/ubiq.cgi
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/ubiq.cgi
Manifying 7 pod documents
Manifying 4 pod documents
PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/autoddl.t .....
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 2/2 subtests
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/bond.t ........
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 5/5 subtests
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/cvterm.t ......
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
t/feature.t ..... ok
t/norm2.t ....... ok
t/norm3.t ....... ok
t/normalize.t ... ok
t/parsesql.t .... ok
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/store1.t ......
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 2/2 subtests
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/store2.t ......
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 2/2 subtests
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/store2b.t .....
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 2/2 subtests
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/store3.t ......
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 2/2 subtests
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/store4.t ......
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 4/4 subtests
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/store5.t ......
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 4/4 subtests
sh: 1: dropdb: not found
sh: 1: createdb: not found
PROBLEM recreating using: dropdb test;sleep 2; createdb test
DBI connect('dbname=test','',...) failed: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 81.
Could not connect to database: "dbi:Pg:dbname=test"
EITHER The required DBD driver "Pg" is not installed
OR There is no such database as "dbi:Pg:dbname=test"
COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test )
Died at /home/ryan/.cpanm/work/1493661251.7676/DBIx-DBStag-0.12/blib/lib/DBIx/DBStag.pm line 120.
...propagated at t/DBStagTest.pm line 44.
t/xort-style.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 3/3 subtests
Test Summary Report
-------------------
t/autoddl.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 2 tests but ran 0.
t/bond.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 5 tests but ran 0.
t/cvterm.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/store1.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 2 tests but ran 0.
t/store2.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 2 tests but ran 0.
t/store2b.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 2 tests but ran 0.
t/store3.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 2 tests but ran 0.
t/store4.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 4 tests but ran 0.
t/store5.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 4 tests but ran 0.
t/xort-style.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 3 tests but ran 0.
Files=15, Tests=38, 21 wallclock secs ( 0.04 usr 0.00 sys + 0.96 cusr 0.05 csys = 1.05 CPU)
Result: FAIL
Failed 10/15 test programs. 0/38 subtests failed.
Makefile:955: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 127
! Installing DBIx::DBStag failed. See /home/ryan/.cpanm/work/1493661251.7676/build.log for details. Retry with --force to force install it.
Searching GO::Parser () on cpanmetadb ...
Unpacking go-perl-0.15.tar.gz
FAIL
--> Working on GO::Parser
Fetching http://www.cpan.org/authors/id/C/CM/CMUNGALL/go-perl-0.15.tar.gz ... OK
go-perl-0.15/
go-perl-0.15/Changes
go-perl-0.15/create-manifest.sh
go-perl-0.15/doc/
go-perl-0.15/GO/
go-perl-0.15/go-perl.pod
go-perl-0.15/INSTALL
go-perl-0.15/INSTALL.html
go-perl-0.15/Makefile.PL
go-perl-0.15/MANIFEST
go-perl-0.15/META.json
go-perl-0.15/META.yml
go-perl-0.15/README
go-perl-0.15/scripts/
go-perl-0.15/t/
go-perl-0.15/t/data/
go-perl-0.15/t/t010build.t
go-perl-0.15/t/t020paths.t
go-perl-0.15/t/t030detecterror.t
go-perl-0.15/t/t050oboformat.t
go-perl-0.15/t/t060oboformat2.t
go-perl-0.15/t/t070parseannot2obj.t
go-perl-0.15/t/t080gofmt2.t
go-perl-0.15/t/t100roundtrip.t
go-perl-0.15/t/t110basic.t
go-perl-0.15/t/t120rt.sh
go-perl-0.15/t/t130relations.t
go-perl-0.15/t/t140subgraph.t
go-perl-0.15/t/t150xref.t
go-perl-0.15/t/t160logicaldef.t
go-perl-0.15/t/t170chadoxml.t
go-perl-0.15/t/t175chadoxml_oborel.t
go-perl-0.15/t/t180ncbi_taxonomy.t
go-perl-0.15/t/t200impliedlinks.t
go-perl-0.15/t/t210cache.t
go-perl-0.15/t/t220xref_esc.t
go-perl-0.15/t/t230term_expression.t
go-perl-0.15/t/t240ga2obj.t
go-perl-0.15/t/t260oborel_in_chado.t
go-perl-0.15/t/t270oborel_in_owl.t
go-perl-0.15/t/t290disjoint.t
go-perl-0.15/t/validate_all.x
go-perl-0.15/t/data/bad-dbxref.obo
go-perl-0.15/t/data/gene_association.test_properties
go-perl-0.15/t/data/generic.0208
go-perl-0.15/t/data/go-truncated.obo
go-perl-0.15/t/data/go-with-local-id-mapping.obo
go-perl-0.15/t/data/GO.defs
go-perl-0.15/t/data/impliedlinks.obo
go-perl-0.15/t/data/llm.obo
go-perl-0.15/t/data/llm2.obo
go-perl-0.15/t/data/mged.obo
go-perl-0.15/t/data/process.ontology
go-perl-0.15/t/data/regulation_of_somitogenesis.obo
go-perl-0.15/t/data/regulation_test.obo
go-perl-0.15/t/data/relationship.obo
go-perl-0.15/t/data/sample.ncbi_taxonomy
go-perl-0.15/t/data/spkw2go
go-perl-0.15/t/data/systematic_synonym_test.obo
go-perl-0.15/t/data/test-enrichment-genes.txt
go-perl-0.15/t/data/test-function.dat
go-perl-0.15/t/data/test-gene_association.fb
go-perl-0.15/t/data/test-go.obo
go-perl-0.15/t/data/test-nucleolar.obo
go-perl-0.15/t/data/test2.ontology
go-perl-0.15/t/data/test_bad_function.dat
go-perl-0.15/t/data/xref_encoding_test.obo
go-perl-0.15/scripts/go-apply-xslt
go-perl-0.15/scripts/go-dag-summary.pl
go-perl-0.15/scripts/go-export-graph.pl
go-perl-0.15/scripts/go-export-prolog.pl
go-perl-0.15/scripts/go-filter-subset.pl
go-perl-0.15/scripts/go-make-slim.pl
go-perl-0.15/scripts/go-perl-make-pod-html.pl
go-perl-0.15/scripts/go-show-assocs-by-node.pl
go-perl-0.15/scripts/go-show-paths-to-root.pl
go-perl-0.15/scripts/go-validate-xml
go-perl-0.15/scripts/go2chadoxml
go-perl-0.15/scripts/go2error_report
go-perl-0.15/scripts/go2fmt.pl
go-perl-0.15/scripts/go2godb_prestore
go-perl-0.15/scripts/go2obo
go-perl-0.15/scripts/go2obo_html
go-perl-0.15/scripts/go2obo_text
go-perl-0.15/scripts/go2obo_xml
go-perl-0.15/scripts/go2owl
go-perl-0.15/scripts/go2owl_simple
go-perl-0.15/scripts/go2pathlist
go-perl-0.15/scripts/go2prolog
go-perl-0.15/scripts/go2racer
go-perl-0.15/scripts/go2rdf
go-perl-0.15/scripts/go2rdfxml
go-perl-0.15/scripts/go2summary
go-perl-0.15/scripts/go2sxpr
go-perl-0.15/scripts/go2tbl
go-perl-0.15/scripts/go2text_html
go-perl-0.15/scripts/go2xml
go-perl-0.15/scripts/ipr2obo
go-perl-0.15/scripts/ipr2obo_xml
go-perl-0.15/scripts/map2slim
go-perl-0.15/GO/Basic.pm
go-perl-0.15/GO/Handlers/
go-perl-0.15/GO/IO/
go-perl-0.15/GO/Metadata/
go-perl-0.15/GO/Model/
go-perl-0.15/GO/ObjCache.pm
go-perl-0.15/GO/ObjFactory.pm
go-perl-0.15/GO/Parser.pm
go-perl-0.15/GO/Parsers/
go-perl-0.15/GO/Utils.pm
go-perl-0.15/GO/xsl/
go-perl-0.15/GO/xsl/chadoxml_to_oboxml.xsl
go-perl-0.15/GO/xsl/ipr_to_oboxml.xsl
go-perl-0.15/GO/xsl/oboxml_filter.xsl
go-perl-0.15/GO/xsl/oboxml_to_chadoxml.xsl
go-perl-0.15/GO/xsl/oboxml_to_dig.xsl
go-perl-0.15/GO/xsl/oboxml_to_godb_prestore.xsl
go-perl-0.15/GO/xsl/oboxml_to_obd_prestore.xsl
go-perl-0.15/GO/xsl/oboxml_to_obotext.xsl
go-perl-0.15/GO/xsl/oboxml_to_owl.xsl
go-perl-0.15/GO/xsl/oboxml_to_racer.xsl
go-perl-0.15/GO/xsl/oboxml_to_simple_owl.xsl
go-perl-0.15/GO/xsl/oboxml_to_summary_table.xsl
go-perl-0.15/GO/xsl/owl_to_oboxml.xsl
go-perl-0.15/GO/xsl/text_html.xsl
go-perl-0.15/GO/Parsers/base_parser.pm
go-perl-0.15/GO/Parsers/generic_tagval_parser.pm
go-perl-0.15/GO/Parsers/go_assoc_parser.pm
go-perl-0.15/GO/Parsers/go_def_parser.pm
go-perl-0.15/GO/Parsers/go_ids_parser.pm
go-perl-0.15/GO/Parsers/go_ont_parser.pm
go-perl-0.15/GO/Parsers/go_xref_parser.pm
go-perl-0.15/GO/Parsers/locuslink_parser.pm
go-perl-0.15/GO/Parsers/mesh_parser.pm
go-perl-0.15/GO/Parsers/mgi_assoc_parser.pm
go-perl-0.15/GO/Parsers/ncbi_taxon_names_parser.pm
go-perl-0.15/GO/Parsers/ncbi_taxonomy_parser.pm
go-perl-0.15/GO/Parsers/obj_emitter.pm
go-perl-0.15/GO/Parsers/obj_storable_parser.pm
go-perl-0.15/GO/Parsers/obj_yaml_parser.pm
go-perl-0.15/GO/Parsers/obo_parser.pm
go-perl-0.15/GO/Parsers/obo_text_parser.pm
go-perl-0.15/GO/Parsers/obo_xml_parser.pm
go-perl-0.15/GO/Parsers/owl_parser.pm
go-perl-0.15/GO/Parsers/ParserEventNames.pm
go-perl-0.15/GO/Parsers/references_parser.pm
go-perl-0.15/GO/Parsers/refgenomes_parser.pm
go-perl-0.15/GO/Parsers/unknown_format_parser.pm
go-perl-0.15/GO/Parsers/xrf_abbs_parser.pm
go-perl-0.15/GO/Model/Association.pm
go-perl-0.15/GO/Model/CrossProduct.pm
go-perl-0.15/GO/Model/DB.pm
go-perl-0.15/GO/Model/Evidence.pm
go-perl-0.15/GO/Model/GeneProduct.pm
go-perl-0.15/GO/Model/Graph.pm
go-perl-0.15/GO/Model/GraphIterator.pm
go-perl-0.15/GO/Model/GraphNodeInstance.pm
go-perl-0.15/GO/Model/LogicalDefinition.pm
go-perl-0.15/GO/Model/Modification.pm
go-perl-0.15/GO/Model/Ontology.pm
go-perl-0.15/GO/Model/Path.pm
go-perl-0.15/GO/Model/Property.pm
go-perl-0.15/GO/Model/Relationship.pm
go-perl-0.15/GO/Model/Restriction.pm
go-perl-0.15/GO/Model/Root.pm
go-perl-0.15/GO/Model/Seq.pm
go-perl-0.15/GO/Model/Species.pm
go-perl-0.15/GO/Model/Term.pm
go-perl-0.15/GO/Model/TreeIterator.pm
go-perl-0.15/GO/Model/Xref.pm
go-perl-0.15/GO/Metadata/Panther.pm
go-perl-0.15/GO/IO/Analysis.pm
go-perl-0.15/GO/IO/Blast.pm
go-perl-0.15/GO/IO/Dotty.pm
go-perl-0.15/GO/IO/go_assoc.pm
go-perl-0.15/GO/IO/ObanOwl.pm
go-perl-0.15/GO/IO/OBDXML.pm
go-perl-0.15/GO/IO/RDFXML.pm
go-perl-0.15/GO/IO/XML.pm
go-perl-0.15/GO/Handlers/abstract_prolog_writer.pm
go-perl-0.15/GO/Handlers/abstract_sql_writer.pm
go-perl-0.15/GO/Handlers/base.pm
go-perl-0.15/GO/Handlers/go_def.pm
go-perl-0.15/GO/Handlers/go_ont.pm
go-perl-0.15/GO/Handlers/go_xref.pm
go-perl-0.15/GO/Handlers/godb_prestore.pm
go-perl-0.15/GO/Handlers/lexanalysis.pm
go-perl-0.15/GO/Handlers/lexanalysis2sql.pm
go-perl-0.15/GO/Handlers/obj.pm
go-perl-0.15/GO/Handlers/obj_storable.pm
go-perl-0.15/GO/Handlers/obj_yaml.pm
go-perl-0.15/GO/Handlers/obo.pm
go-perl-0.15/GO/Handlers/obo_godb_flat.pm
go-perl-0.15/GO/Handlers/obo_html.pm
go-perl-0.15/GO/Handlers/obo_sxpr.pm
go-perl-0.15/GO/Handlers/obo_text.pm
go-perl-0.15/GO/Handlers/obo_xml.pm
go-perl-0.15/GO/Handlers/owl.pm
go-perl-0.15/GO/Handlers/owl_to_obo_text.pm
go-perl-0.15/GO/Handlers/pathlist.pm
go-perl-0.15/GO/Handlers/prolog.pm
go-perl-0.15/GO/Handlers/rdf.pm
go-perl-0.15/GO/Handlers/summary.pm
go-perl-0.15/GO/Handlers/sxpr.pm
go-perl-0.15/GO/Handlers/tbl.pm
go-perl-0.15/GO/Handlers/text_html.pm
go-perl-0.15/GO/Handlers/xml.pm
go-perl-0.15/GO/Handlers/xsl_base.pm
go-perl-0.15/doc/go-perl-doc.html
go-perl-0.15/doc/go-perl-event-handling.html
go-perl-0.15/doc/gomodel.dia
go-perl-0.15/doc/gomodel.png
go-perl-0.15/doc/map2slim.gif
go-perl-0.15/doc/stylesheet.css
Entering go-perl-0.15
Checking configure dependencies from META.json
Checking if you have ExtUtils::MakeMaker 6.58 ... Yes (7.24)
Running Makefile.PL
Configuring go-perl-0.15 ...
NOTICE: ** You do not have xsltproc **
This tool is not required for go-perl, but it is useful for for
certain kinds of format conversion (eg converting to OWL format). You
will also need this tool if you are installing go-db-perl
You can safely ignore this notification message; Even if you do intend
to use go-db-perl later, you can install xsltproc at a later date
xsltproc is available as part of libxslt. See http://xmlsoft.org/XSLT/
for details
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for GO
Writing MYMETA.yml and MYMETA.json
Checking dependencies from MYMETA.json ...
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
Checking if you have Data::Dumper 0 ... Yes (2.161)
Checking if you have Data::Stag 0.07 ... Yes (0.14)
OK
Building and testing go-perl-0.15 ... cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm
cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm
cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm
cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm
cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm
cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm
cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm
cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm
cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm
cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm
cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm
cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm
cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm
cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm
cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm
cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm
cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm
cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm
cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm
cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm
cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm
cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm
cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm
cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm
cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm
cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm
cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm
cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm
cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm
cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm
cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm
cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm
cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm
cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm
cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm
cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm
cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm
cp GO/Basic.pm blib/lib/GO/Basic.pm
cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm
cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm
cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm
cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm
cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm
cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm
cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm
cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm
cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm
cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm
cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm
cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm
cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm
cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm
cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm
cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm
cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm
cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm
cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm
cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm
cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm
cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm
cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm
cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm
cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm
cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm
cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm
cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm
cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm
cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm
cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm
cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm
cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm
cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm
cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm
cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm
cp GO/Parser.pm blib/lib/GO/Parser.pm
cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm
cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm
cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm
cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm
cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm
cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm
cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl
cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm
cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl
cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl
cp GO/Utils.pm blib/lib/GO/Utils.pm
cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl
cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl
cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl
cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm
cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl
cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl
cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl
cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl
cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm
cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl
cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl
cp go-perl.pod blib/lib/go-perl.pod
cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm
cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm
cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl
cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm
cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl
cp scripts/go-apply-xslt blib/script/go-apply-xslt
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt
cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl
cp scripts/go-export-graph.pl blib/script/go-export-graph.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl
cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl
cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl
cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl
cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl
cp scripts/go2chadoxml blib/script/go2chadoxml
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml
cp scripts/go2error_report blib/script/go2error_report
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report
cp scripts/go2fmt.pl blib/script/go2fmt.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl
cp scripts/go2godb_prestore blib/script/go2godb_prestore
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore
cp scripts/go2obo blib/script/go2obo
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo
cp scripts/go2obo_html blib/script/go2obo_html
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html
cp scripts/go2obo_text blib/script/go2obo_text
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text
cp scripts/go2obo_xml blib/script/go2obo_xml
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml
cp scripts/go2owl blib/script/go2owl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl
cp scripts/go2pathlist blib/script/go2pathlist
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist
cp scripts/go2prolog blib/script/go2prolog
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog
cp scripts/go2rdf blib/script/go2rdf
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf
cp scripts/go2rdfxml blib/script/go2rdfxml
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml
cp scripts/go2summary blib/script/go2summary
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary
cp scripts/go2sxpr blib/script/go2sxpr
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr
cp scripts/go2tbl blib/script/go2tbl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl
cp scripts/go2text_html blib/script/go2text_html
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html
cp scripts/go2xml blib/script/go2xml
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml
cp scripts/map2slim blib/script/map2slim
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim
Manifying 7 pod documents
Manifying 38 pod documents
Manifying 33 pod documents
PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.8148.llm.obo-1.xml > TMP.8148.llm.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.8148.llm.obo-1.xml", "TMP.8148.llm.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x558036047b88), "./t/data/llm.obo") called at t/t170chadoxml.t line 45
t/t170chadoxml.t .........
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.8150.llm2.obo-1.xml > TMP.8150.llm2.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.8150.llm2.obo-1.xml", "TMP.8150.llm2.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x55838a23eb98), "./t/data/llm2.obo") called at t/t175chadoxml_oborel.t line 45
t/t175chadoxml_oborel.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.8158.go-with-local-id-mapping.obo-1.xml > TMP.8158.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.8158.go-with-local-id-mapping.obo-1.xml", "TMP.8158.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x55d38b7a5c48), "./t/data/go-with-local-id-mapping.obo") called at t/t260oborel_in_chado.t line 44
t/t260oborel_in_chado.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 6/6 subtests
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.8160.go-with-local-id-mapping.obo-1.xml > TMP.8160.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.8160.go-with-local-id-mapping.obo-1.xml", "TMP.8160.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x55d03f04dfe0), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t170chadoxml.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t175chadoxml_oborel.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t260oborel_in_chado.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 6 tests but ran 0.
t/t270oborel_in_owl.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=112, 1 wallclock secs ( 0.07 usr 0.01 sys + 1.61 cusr 0.03 csys = 1.72 CPU)
Result: FAIL
Failed 4/24 test programs. 0/112 subtests failed.
Makefile:1358: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
! Installing GO::Parser failed. See /home/ryan/.cpanm/work/1493661251.7676/build.log for details. Retry with --force to force install it.
! Installing the dependencies failed: Module 'DBIx::DBStag' is not installed, Module 'GO::Parser' is not installed, Module 'Class::DBI::View' is not installed
! Bailing out the installation for Bundle-GMOD-1.0.
FAIL
Command [cpanm --reinstall --verbose Bundle::GMOD] terminated with exit code 1 ($? = 256) under the following perl environment:
Command terminated with non-zero status.
Current perl:
Name: perl-blead
Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
Compiled at: Mar 30 2017 03:10:09
perlbrew:
version: 0.78
ENV:
PERLBREW_ROOT: /home/ryan/perl5/perlbrew
PERLBREW_HOME: /home/ryan/.perlbrew
PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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