127 lines
5.4 KiB
Text
127 lines
5.4 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7042 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1491935435.32291
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You have make /usr/bin/make
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You have LWP 6.24
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Boulder::Labbase () on cpanmetadb ...
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Unpacking Boulder-1.14.tar.gz
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--> Working on Boulder::Labbase
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Fetching http://www.cpan.org/authors/id/L/LD/LDS/Boulder-1.14.tar.gz ... OK
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Boulder-1.14/
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Boulder-1.14/Boulder/
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Boulder-1.14/Boulder/Swissprot.pm
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Boulder-1.14/Boulder/Labbase.pm
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Boulder-1.14/Boulder/Blast/
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Boulder-1.14/Boulder/Blast/WU.pm
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Boulder-1.14/Boulder/Blast/NCBI.pm
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Boulder-1.14/Boulder/Omim.pm
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Boulder-1.14/Boulder/Blast.pm
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Boulder-1.14/Boulder/Unigene.pm
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Boulder-1.14/Boulder/Stream.pm
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Boulder-1.14/Boulder/XML.pm
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Boulder-1.14/Boulder/String.pm
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Boulder-1.14/Boulder/Genbank.pm
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Boulder-1.14/Boulder/Store.pm
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Boulder-1.14/Boulder/Medline.pm
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Boulder-1.14/README
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Boulder-1.14/MANIFEST
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Boulder-1.14/Stone/
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Boulder-1.14/Stone/GB_Sequence.pm
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Boulder-1.14/Stone/Cursor.pm
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Boulder-1.14/Stone.pm
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Boulder-1.14/eg/
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Boulder-1.14/eg/quickblast.pl
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Boulder-1.14/eg/gb_get
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Boulder-1.14/eg/test.pl
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Boulder-1.14/eg/genbank2.pl
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Boulder-1.14/eg/genbank3.pl
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Boulder-1.14/eg/gb_search
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Boulder-1.14/eg/genbank.pl
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Boulder-1.14/Boulder.pod
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Boulder-1.14/Makefile.PL
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Boulder-1.14/t/
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Boulder-1.14/t/stream.t
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Boulder-1.14/t/store.t
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Boulder-1.14/ChangeLog
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Boulder-1.14/docs/
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Boulder-1.14/docs/blast_tags.txt
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Boulder-1.14/docs/javaboulder.txt
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Boulder-1.14/docs/genbank_tags.txt
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Entering Boulder-1.14
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META.yml/json not found. Creating skeleton for it.
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Running Makefile.PL
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Configuring Boulder-1.14 ... Checking if your kit is complete...
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Looks good
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Warning: LINKTYPE set to '', no longer necessary
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Generating a Unix-style Makefile
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Writing Makefile for Boulder
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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OK
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Building and testing Boulder-1.14 ... cp Boulder/Labbase.pm blib/lib/Boulder/Labbase.pm
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cp Boulder.pod blib/lib/Boulder.pod
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cp Boulder/XML.pm blib/lib/Boulder/XML.pm
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cp Boulder/Blast.pm blib/lib/Boulder/Blast.pm
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cp Stone.pm blib/lib/Stone.pm
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cp Boulder/Medline.pm blib/lib/Boulder/Medline.pm
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cp Boulder/Store.pm blib/lib/Boulder/Store.pm
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cp Boulder/Genbank.pm blib/lib/Boulder/Genbank.pm
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cp Boulder/Stream.pm blib/lib/Boulder/Stream.pm
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cp Boulder/Omim.pm blib/lib/Boulder/Omim.pm
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cp Boulder/Swissprot.pm blib/lib/Boulder/Swissprot.pm
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cp Stone/Cursor.pm blib/lib/Stone/Cursor.pm
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cp Boulder/Unigene.pm blib/lib/Boulder/Unigene.pm
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cp Boulder/Blast/NCBI.pm blib/lib/Boulder/Blast/NCBI.pm
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cp Stone/GB_Sequence.pm blib/lib/Stone/GB_Sequence.pm
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cp Boulder/String.pm blib/lib/Boulder/String.pm
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cp Boulder/Blast/WU.pm blib/lib/Boulder/Blast/WU.pm
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Manifying 15 pod documents
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PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
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Can't locate DB_File.pm in @INC (you may need to install the DB_File module) (@INC contains: .. ../blib/lib ../blib/arch /home/ryan/.cpanm/work/1491935435.32291/Boulder-1.14/blib/lib /home/ryan/.cpanm/work/1491935435.32291/Boulder-1.14/blib/arch /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0 /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0 .) at /home/ryan/.cpanm/work/1491935435.32291/Boulder-1.14/blib/lib/Boulder/Store.pm line 250.
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BEGIN failed--compilation aborted at /home/ryan/.cpanm/work/1491935435.32291/Boulder-1.14/blib/lib/Boulder/Store.pm line 250.
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Compilation failed in require at t/store.t line 4.
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BEGIN failed--compilation aborted at t/store.t line 4.
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t/store.t ...
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Dubious, test returned 2 (wstat 512, 0x200)
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No subtests run
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t/stream.t .. ok
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Test Summary Report
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-------------------
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t/store.t (Wstat: 512 Tests: 0 Failed: 0)
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Non-zero exit status: 2
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Parse errors: No plan found in TAP output
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Files=2, Tests=20, 0 wallclock secs ( 0.01 usr 0.00 sys + 0.01 cusr 0.00 csys = 0.02 CPU)
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Result: FAIL
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Failed 1/2 test programs. 0/20 subtests failed.
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Makefile:893: recipe for target 'test_dynamic' failed
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make: *** [test_dynamic] Error 255
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! Installing Boulder::Labbase failed. See /home/ryan/.cpanm/work/1491935435.32291/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose Boulder::Labbase] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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