152 lines
8.7 KiB
Text
152 lines
8.7 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493066526.32389
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::Tools::Primer3Redux () on cpanmetadb ...
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Unpacking Bio-Tools-Primer3Redux-0.09.tar.gz
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--> Working on Bio::Tools::Primer3Redux
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Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/Bio-Tools-Primer3Redux-0.09.tar.gz ... OK
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Bio-Tools-Primer3Redux-0.09
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Bio-Tools-Primer3Redux-0.09/README
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Bio-Tools-Primer3Redux-0.09/Changes
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Bio-Tools-Primer3Redux-0.09/LICENSE
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Bio-Tools-Primer3Redux-0.09/Build.PL
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Bio-Tools-Primer3Redux-0.09/dist.ini
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Bio-Tools-Primer3Redux-0.09/META.yml
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Bio-Tools-Primer3Redux-0.09/MANIFEST
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Bio-Tools-Primer3Redux-0.09/META.json
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Bio-Tools-Primer3Redux-0.09/t
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Bio-Tools-Primer3Redux-0.09/t/00-compile.t
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Bio-Tools-Primer3Redux-0.09/t/release-eol.t
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Bio-Tools-Primer3Redux-0.09/t/data
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Bio-Tools-Primer3Redux-0.09/t/data/Primer3.fa
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Bio-Tools-Primer3Redux-0.09/t/release-no-tabs.t
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Bio-Tools-Primer3Redux-0.09/t/Run
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Bio-Tools-Primer3Redux-0.09/t/Run/Primer3Redux.t
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Bio-Tools-Primer3Redux-0.09/t/release-pod-syntax.t
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_settings.txt
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Bio-Tools-Primer3Redux-0.09/lib/Bio/Tools
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Bio-Tools-Primer3Redux-0.09/lib/Bio/Tools/Primer3Redux.pm
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/loops.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/loops.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/stack.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/stack.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/dangle.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/dangle.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/tstack.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/stackmm.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/stackmm.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/triloop.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/triloop.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/tstack2.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/tstack2.ds
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Bio-Tools-Primer3Redux-0.09/lib/Bio/Tools/Run
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Bio-Tools-Primer3Redux-0.09/lib/Bio/Tools/Run/Primer3Redux.pm
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/tetraloop.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/tetraloop.ds
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Bio-Tools-Primer3Redux-0.09/lib/Bio/Tools/Primer3Redux
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Bio-Tools-Primer3Redux-0.09/lib/Bio/Tools/Primer3Redux/Primer.pm
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Bio-Tools-Primer3Redux-0.09/lib/Bio/Tools/Primer3Redux/Result.pm
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/tstack_tm_inf.ds
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Bio-Tools-Primer3Redux-0.09/lib/Bio/Tools/Primer3Redux/PrimerPair.pm
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/loops_i.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/loops_i.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/stack_i.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/stack_i.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/dangle_i.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/dangle_i.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/tstack_i.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/tstack_i.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/triloop_i.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/triloop_i.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/tstack2_i.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/tstack2_i.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/tetraloop_i.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/tetraloop_i.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/stackmm_i_mm.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/stackmm_i_mm.ds
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/tstack_tm_inf_i.dh
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Bio-Tools-Primer3Redux-0.09/t/data/primer3_config/interpretations/tstack_tm_inf_i.ds
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Entering Bio-Tools-Primer3Redux-0.09
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Checking configure dependencies from META.json
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Checking if you have Module::Build 0.38 ... Yes (0.4222)
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Checking if you have ExtUtils::Install 1.46 ... Yes (2.04)
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Running Build.PL
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Configuring Bio-Tools-Primer3Redux-0.09 ... Created MYMETA.yml and MYMETA.json
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Creating new 'Build' script for 'Bio-Tools-Primer3Redux' version '0.09'
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Checking dependencies from MYMETA.json ...
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Checking if you have Test::Most 0 ... Yes (0.35)
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Checking if you have Bio::Root::Version v1.6.900 ... Yes (1.007001)
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OK
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Building and testing Bio-Tools-Primer3Redux-0.09 ... Building Bio-Tools-Primer3Redux
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Base class package "Bio::Tools::Run::WrapperBase" is empty.
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(Perhaps you need to 'use' the module which defines that package first,
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or make that module available in @INC (@INC contains: lib /home/ryan/.cpanm/work/1493066526.32389/Bio-Tools-Primer3Redux-0.09/blib/lib /home/ryan/.cpanm/work/1493066526.32389/Bio-Tools-Primer3Redux-0.09/blib/arch /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0 /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0 .).
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at lib/Bio/Tools/Run/Primer3Redux.pm line 20.
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BEGIN failed--compilation aborted at lib/Bio/Tools/Run/Primer3Redux.pm line 20.
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Compilation failed in require at -e line 1.
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# Failed test 'Bio::Tools::Run::Primer3Redux loaded ok'
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# at t/00-compile.t line 48.
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# ''
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# doesn't match '(?^s:^\s*Bio::Tools::Run::Primer3Redux ok)'
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# Looks like you failed 1 test of 5.
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t/00-compile.t ..........
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Dubious, test returned 1 (wstat 256, 0x100)
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Failed 1/5 subtests
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Base class package "Bio::Tools::Run::WrapperBase" is empty.
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(Perhaps you need to 'use' the module which defines that package first,
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or make that module available in @INC (@INC contains: /home/ryan/.cpanm/work/1493066526.32389/Bio-Tools-Primer3Redux-0.09/blib/lib /home/ryan/.cpanm/work/1493066526.32389/Bio-Tools-Primer3Redux-0.09/blib/arch /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0 /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0 .).
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at /home/ryan/.cpanm/work/1493066526.32389/Bio-Tools-Primer3Redux-0.09/blib/lib/Bio/Tools/Run/Primer3Redux.pm line 20.
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BEGIN failed--compilation aborted at /home/ryan/.cpanm/work/1493066526.32389/Bio-Tools-Primer3Redux-0.09/blib/lib/Bio/Tools/Run/Primer3Redux.pm line 20.
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Compilation failed in require at t/Run/Primer3Redux.t line 10.
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BEGIN failed--compilation aborted at t/Run/Primer3Redux.t line 10.
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t/Run/Primer3Redux.t ....
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Dubious, test returned 2 (wstat 512, 0x200)
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No subtests run
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t/release-eol.t ......... skipped: these tests are for release candidate testing
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t/release-no-tabs.t ..... skipped: these tests are for release candidate testing
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t/release-pod-syntax.t .. skipped: these tests are for release candidate testing
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Test Summary Report
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-------------------
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t/00-compile.t (Wstat: 256 Tests: 5 Failed: 1)
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Failed test: 5
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Non-zero exit status: 1
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t/Run/Primer3Redux.t (Wstat: 512 Tests: 0 Failed: 0)
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Non-zero exit status: 2
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Parse errors: No plan found in TAP output
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Files=5, Tests=5, 3 wallclock secs ( 0.01 usr 0.00 sys + 0.32 cusr 0.02 csys = 0.35 CPU)
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Result: FAIL
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Failed 2/5 test programs. 1/5 subtests failed.
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! Installing Bio::Tools::Primer3Redux failed. See /home/ryan/.cpanm/work/1493066526.32389/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose Bio::Tools::Primer3Redux] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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