111 lines
5.1 KiB
Text
111 lines
5.1 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493055925.15059
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::ORA () on cpanmetadb ...
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Unpacking ora-2.0.tar.gz
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--> Working on Bio::ORA
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Fetching http://www.cpan.org/authors/id/C/CE/CERATITES/ora-2.0.tar.gz ... OK
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ora-2.0/
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ora-2.0/README.md
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ora-2.0/LICENSE.md
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ora-2.0/SIGNATURE
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ora-2.0/MANIFEST
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ora-2.0/lib/
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ora-2.0/lib/Bio/
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ora-2.0/lib/Bio/ORA.pm
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ora-2.0/Makefile.PL
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ora-2.0/CHANGES.md
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ora-2.0/t/
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ora-2.0/t/test.t
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ora-2.0/scripts/
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ora-2.0/scripts/or.pl
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ora-2.0/scripts/or.hmm.h3f
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ora-2.0/scripts/or.hmm.h3p
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ora-2.0/scripts/or.hmm.h3m
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ora-2.0/scripts/or.hmm.h3i
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ora-2.0/scripts/or.hmm
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ora-2.0/scripts/or.fasta
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Entering ora-2.0
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META.yml/json not found. Creating skeleton for it.
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Running Makefile.PL
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Configuring ora-2.0 ... Checking if your kit is complete...
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Looks good
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Generating a Unix-style Makefile
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Writing Makefile for Bio::ORA
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have Bio::Root::Version 0 ... Yes (1.007001)
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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Checking if you have Getopt::Long 0 ... Yes (2.49)
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Checking if you have File::Basename 0 ... Yes (2.85)
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Checking if you have File::Temp 0 ... Yes (0.2304)
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Checking if you have Cwd 0 ... Yes (3.62)
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Checking if you have IO::File 0 ... Yes (1.16)
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OK
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Building and testing Bio-ORA-2.0 ... cp lib/Bio/ORA.pm blib/lib/Bio/ORA.pm
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cp scripts/or.fasta blib/script/or.fasta
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/or.fasta
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cp scripts/or.hmm blib/script/or.hmm
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/or.hmm
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cp scripts/or.hmm.h3f blib/script/or.hmm.h3f
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/or.hmm.h3f
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cp scripts/or.hmm.h3i blib/script/or.hmm.h3i
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/or.hmm.h3i
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cp scripts/or.hmm.h3m blib/script/or.hmm.h3m
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/or.hmm.h3m
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cp scripts/or.hmm.h3p blib/script/or.hmm.h3p
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/or.hmm.h3p
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cp scripts/or.pl blib/script/or.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/or.pl
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Manifying 1 pod document
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PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
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Can't locate Bio/Seq.pm in @INC (you may need to install the Bio::Seq module) (@INC contains: /home/ryan/.cpanm/work/1493055925.15059/ora-2.0/blib/lib /home/ryan/.cpanm/work/1493055925.15059/ora-2.0/blib/arch /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1 /usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at ./scripts/or.pl line 28.
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BEGIN failed--compilation aborted at ./scripts/or.pl line 28.
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# Failed test 'Run test (dog chromosome 10)'
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# at t/test.t line 27.
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# Looks like you failed 1 test of 1.
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t/test.t ..
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Dubious, test returned 1 (wstat 256, 0x100)
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Failed 1/1 subtests
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Test Summary Report
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-------------------
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t/test.t (Wstat: 256 Tests: 1 Failed: 1)
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Failed test: 1
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Non-zero exit status: 1
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Files=1, Tests=1, 8 wallclock secs ( 0.00 usr 0.00 sys + 0.44 cusr 0.08 csys = 0.52 CPU)
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Result: FAIL
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Failed 1/1 test programs. 1/1 subtests failed.
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Makefile:912: recipe for target 'test_dynamic' failed
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make: *** [test_dynamic] Error 1
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! Installing Bio::ORA failed. See /home/ryan/.cpanm/work/1493055925.15059/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose Bio::ORA] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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