215 lines
8.5 KiB
Text
215 lines
8.5 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493067285.1023
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::Network::Edge () on cpanmetadb ...
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Unpacking BioPerl-Network-1.006902.tar.gz
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--> Working on Bio::Network::Edge
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Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006902.tar.gz ... OK
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BioPerl-Network-1.006902
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BioPerl-Network-1.006902/AUTHORS
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BioPerl-Network-1.006902/BUGS
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BioPerl-Network-1.006902/Build.PL
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BioPerl-Network-1.006902/Changes
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BioPerl-Network-1.006902/INSTALL
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BioPerl-Network-1.006902/INSTALL.SKIP
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BioPerl-Network-1.006902/LICENSE
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BioPerl-Network-1.006902/MANIFEST
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BioPerl-Network-1.006902/META.json
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BioPerl-Network-1.006902/META.yml
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BioPerl-Network-1.006902/README
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BioPerl-Network-1.006902/lib
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BioPerl-Network-1.006902/lib/Bio
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BioPerl-Network-1.006902/lib/Bio/Network
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BioPerl-Network-1.006902/lib/Bio/Network/Edge.pm
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BioPerl-Network-1.006902/lib/Bio/Network/Interaction.pm
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BioPerl-Network-1.006902/lib/Bio/Network/IO.pm
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BioPerl-Network-1.006902/lib/Bio/Network/Node.pm
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BioPerl-Network-1.006902/lib/Bio/Network/ProteinNet.pm
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BioPerl-Network-1.006902/lib/Bio/Network/IO
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BioPerl-Network-1.006902/lib/Bio/Network/IO/dip_tab.pm
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BioPerl-Network-1.006902/lib/Bio/Network/IO/psi10.pm
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BioPerl-Network-1.006902/lib/Bio/Network/IO/psi25.pm
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BioPerl-Network-1.006902/lib/Bio/Network/IO/psi
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BioPerl-Network-1.006902/lib/Bio/Network/IO/psi/intact.pm
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BioPerl-Network-1.006902/t
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BioPerl-Network-1.006902/t/Edge.t
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BioPerl-Network-1.006902/t/Graph-Articulation.x
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BioPerl-Network-1.006902/t/Graph-MD5.t
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BioPerl-Network-1.006902/t/Graph-Seq.t
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BioPerl-Network-1.006902/t/Interaction.t
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BioPerl-Network-1.006902/t/IO_dip_tab.t
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BioPerl-Network-1.006902/t/IO_psi10.t
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BioPerl-Network-1.006902/t/IO_psi25.t
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BioPerl-Network-1.006902/t/Node.t
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BioPerl-Network-1.006902/t/ProteinNet.t
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BioPerl-Network-1.006902/t/data
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BioPerl-Network-1.006902/t/data/00001.xml
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BioPerl-Network-1.006902/t/data/12082530.xls
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BioPerl-Network-1.006902/t/data/arath_small-02.xml
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BioPerl-Network-1.006902/t/data/bovin_small_intact.xml
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BioPerl-Network-1.006902/t/data/human_small-01.xml
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BioPerl-Network-1.006902/t/data/psi_xml.dat
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BioPerl-Network-1.006902/t/data/sulso_small.xml
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BioPerl-Network-1.006902/t/data/sv40_small.xml
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BioPerl-Network-1.006902/t/data/tab1part.tab
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BioPerl-Network-1.006902/t/data/tab2part.tab
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BioPerl-Network-1.006902/t/data/tab3part.tab
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BioPerl-Network-1.006902/t/data/tab4part.tab
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BioPerl-Network-1.006902/t/data/Viruses.psi25.xml
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BioPerl-Network-1.006902/t/lib
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BioPerl-Network-1.006902/t/lib/Sub
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BioPerl-Network-1.006902/t/lib/Sub/Uplevel.pm
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BioPerl-Network-1.006902/t/lib/Test
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BioPerl-Network-1.006902/t/lib/Test/Builder.pm
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BioPerl-Network-1.006902/t/lib/Test/Exception.pm
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BioPerl-Network-1.006902/t/lib/Test/Harness.pm
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BioPerl-Network-1.006902/t/lib/Test/More.pm
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BioPerl-Network-1.006902/t/lib/Test/Simple.pm
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BioPerl-Network-1.006902/t/lib/Test/Tutorial.pod
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BioPerl-Network-1.006902/t/lib/Test/Warn.pm
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BioPerl-Network-1.006902/t/lib/Test/Builder
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BioPerl-Network-1.006902/t/lib/Test/Builder/Module.pm
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BioPerl-Network-1.006902/t/lib/Test/Builder/Tester.pm
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BioPerl-Network-1.006902/t/lib/Test/Harness
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BioPerl-Network-1.006902/t/lib/Test/Harness/Assert.pm
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BioPerl-Network-1.006902/t/lib/Test/Harness/Iterator.pm
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BioPerl-Network-1.006902/t/lib/Test/Harness/Point.pm
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BioPerl-Network-1.006902/t/lib/Test/Harness/Results.pm
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BioPerl-Network-1.006902/t/lib/Test/Harness/Straps.pm
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BioPerl-Network-1.006902/t/lib/Test/Harness/TAP.pod
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BioPerl-Network-1.006902/t/lib/Test/Harness/Util.pm
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Entering BioPerl-Network-1.006902
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Checking configure dependencies from META.json
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Checking if you have Module::Build 0.38 ... Yes (0.4222)
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Checking if you have ExtUtils::Install 1.46 ... Yes (2.04)
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Running Build.PL
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Configuring BioPerl-Network-1.006902 ... Created MYMETA.yml and MYMETA.json
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Creating new 'Build' script for 'BioPerl-Network' version '1.006902'
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Checking dependencies from MYMETA.json ...
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Checking if you have Graph 0.86 ... Yes (0.9704)
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Checking if you have Test::Warn 0 ... Yes (0.32)
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Checking if you have Bio::Root::Version 1.006901 ... Yes (1.007001)
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Checking if you have Test::More 0 ... Yes (1.302078)
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Checking if you have Test::Exception 0 ... Yes (0.43)
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OK
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Building and testing BioPerl-Network-1.006902 ... Building BioPerl-Network
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t/Edge.t ......... ok
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Can't locate object method "add" via package "Digest::MD5=SCALAR(0x561f5a5b0ac0)" (perhaps you forgot to load "Digest::MD5=SCALAR(0x561f5a5b0ac0)"?) at t/Graph-MD5.t line 63.
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# Looks like your test exited with 2 just after 14.
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t/Graph-MD5.t ....
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Dubious, test returned 2 (wstat 512, 0x200)
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Failed 9/23 subtests
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Can't locate object method "seq" via package "Bio::Seq=HASH(0x56194cdc3b78)" (perhaps you forgot to load "Bio::Seq=HASH(0x56194cdc3b78)"?) at t/Graph-Seq.t line 63.
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# Looks like your test exited with 255 just after 14.
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t/Graph-Seq.t ....
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Dubious, test returned 255 (wstat 65280, 0xff00)
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Failed 7/21 subtests
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# Failed test at t/IO_dip_tab.t line 42.
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# Failed test at t/IO_dip_tab.t line 42.
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# Looks like you failed 2 tests of 17.
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t/IO_dip_tab.t ...
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Dubious, test returned 2 (wstat 512, 0x200)
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Failed 2/17 subtests
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Can't locate object method "proteins" via package "Bio::Network::Node=HASH(0x55761d632f70)" (perhaps you forgot to load "Bio::Network::Node=HASH(0x55761d632f70)"?) at t/IO_psi10.t line 34.
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# Looks like your test exited with 255 just after 10.
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t/IO_psi10.t .....
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Dubious, test returned 255 (wstat 65280, 0xff00)
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Failed 12/22 subtests
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t/IO_psi25.t ..... ok
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# Failed test at t/Interaction.t line 51.
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# Looks like you failed 1 test of 23.
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t/Interaction.t ..
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Dubious, test returned 1 (wstat 256, 0x100)
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Failed 1/23 subtests
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# Failed test at t/Node.t line 46.
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# Failed test at t/Node.t line 46.
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# Failed test at t/Node.t line 46.
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# Failed test at t/Node.t line 67.
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# Failed test at t/Node.t line 68.
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# Failed test at t/Node.t line 67.
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# Failed test at t/Node.t line 68.
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# Failed test at t/Node.t line 67.
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# Failed test at t/Node.t line 68.
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# Looks like you failed 9 tests of 32.
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t/Node.t .........
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Dubious, test returned 9 (wstat 2304, 0x900)
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Failed 9/32 subtests
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# Failed test at t/ProteinNet.t line 37.
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# Failed test at t/ProteinNet.t line 37.
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# Failed test at t/ProteinNet.t line 37.
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# Looks like you failed 3 tests of 171.
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t/ProteinNet.t ...
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Dubious, test returned 3 (wstat 768, 0x300)
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Failed 3/171 subtests
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Test Summary Report
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-------------------
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t/Graph-MD5.t (Wstat: 512 Tests: 14 Failed: 0)
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Non-zero exit status: 2
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Parse errors: Bad plan. You planned 23 tests but ran 14.
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t/Graph-Seq.t (Wstat: 65280 Tests: 14 Failed: 0)
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Non-zero exit status: 255
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Parse errors: Bad plan. You planned 21 tests but ran 14.
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t/IO_dip_tab.t (Wstat: 512 Tests: 17 Failed: 2)
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Failed tests: 9, 11
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Non-zero exit status: 2
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t/IO_psi10.t (Wstat: 65280 Tests: 10 Failed: 0)
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Non-zero exit status: 255
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Parse errors: Bad plan. You planned 22 tests but ran 10.
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t/Interaction.t (Wstat: 256 Tests: 23 Failed: 1)
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Failed test: 13
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Non-zero exit status: 1
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t/Node.t (Wstat: 2304 Tests: 32 Failed: 9)
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Failed tests: 11, 13, 15, 20-25
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Non-zero exit status: 9
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t/ProteinNet.t (Wstat: 768 Tests: 171 Failed: 3)
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Failed tests: 9-11
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Non-zero exit status: 3
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Files=9, Tests=299, 19 wallclock secs ( 0.03 usr 0.01 sys + 7.10 cusr 0.13 csys = 7.27 CPU)
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Result: FAIL
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Failed 7/9 test programs. 15/299 subtests failed.
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! Installing Bio::Network::Edge failed. See /home/ryan/.cpanm/work/1493067285.1023/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose Bio::Network::Edge] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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