364 lines
17 KiB
Text
364 lines
17 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1492971452.19233
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::NEXUS () on cpanmetadb ...
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Unpacking Bio-NEXUS-0.78.tar.gz
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--> Working on Bio::NEXUS
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Fetching http://www.cpan.org/authors/id/A/AR/ARLIN/Bio-NEXUS-0.78.tar.gz ... OK
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Bio-NEXUS-0.78/
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Bio-NEXUS-0.78/Build.PL
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Bio-NEXUS-0.78/data/
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Bio-NEXUS-0.78/doc/
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Bio-NEXUS-0.78/exec/
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Bio-NEXUS-0.78/lib/
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Bio-NEXUS-0.78/LICENSE
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Bio-NEXUS-0.78/Makefile.PL
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Bio-NEXUS-0.78/MANIFEST
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Bio-NEXUS-0.78/META.yml
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Bio-NEXUS-0.78/README
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Bio-NEXUS-0.78/README_admin
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Bio-NEXUS-0.78/t/
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Bio-NEXUS-0.78/t/_perl_module-loading.t
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Bio-NEXUS-0.78/t/_perl_perlpod.t
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Bio-NEXUS-0.78/t/_perl_podcoverage.t
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Bio-NEXUS-0.78/t/assumptionsblock_options.t
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Bio-NEXUS-0.78/t/assumptionsblock_wtset-scores.t
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Bio-NEXUS-0.78/t/block_link-and-title.t
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Bio-NEXUS-0.78/t/charactersblock_methods-01.t
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Bio-NEXUS-0.78/t/charactersblock_methods-02.t
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Bio-NEXUS-0.78/t/command_unknown_exception.t
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Bio-NEXUS-0.78/t/data/
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Bio-NEXUS-0.78/t/matrix_character-state-frequency.t
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Bio-NEXUS-0.78/t/matrix_charactersblock-interleave.t
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Bio-NEXUS-0.78/t/matrix_historyblock-probab-distrib.t
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Bio-NEXUS-0.78/t/matrix_polymorphic-and-uncertain.t
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Bio-NEXUS-0.78/t/nexus_add-otu-clone.t
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Bio-NEXUS-0.78/t/nexus_block-level-commands.t
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Bio-NEXUS-0.78/t/nexus_taxa-labels-quoted.t
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Bio-NEXUS-0.78/t/nexus_taxa-labels-squarebrackets.t
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Bio-NEXUS-0.78/t/nexus_taxa-labels.t
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Bio-NEXUS-0.78/t/nexus_wrong_format.t
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Bio-NEXUS-0.78/t/nhxcmd_parsing.t
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Bio-NEXUS-0.78/t/notesblock_methods.t
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Bio-NEXUS-0.78/t/tree_equals.t
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Bio-NEXUS-0.78/t/tree_methods-01.t
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Bio-NEXUS-0.78/t/tree_methods-02.t
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Bio-NEXUS-0.78/t/tree_parsing.t
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Bio-NEXUS-0.78/t/tree_parsing_quotemeta.t
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Bio-NEXUS-0.78/t/tree_support-values.t
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Bio-NEXUS-0.78/t/treesblock_methods.t
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Bio-NEXUS-0.78/t/uncat_clone_methods.t
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Bio-NEXUS-0.78/t/uncat_datablock_clustalw.t
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Bio-NEXUS-0.78/t/uncat_equals_methods.t
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Bio-NEXUS-0.78/t/uncat_excessive_whitespace.t
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Bio-NEXUS-0.78/t/uncat_ntax-nchar-dimensions.t
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Bio-NEXUS-0.78/t/uncat_object-file-equality.t
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Bio-NEXUS-0.78/t/uncat_shared-commands.t
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Bio-NEXUS-0.78/t/uncat_todo.t
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Bio-NEXUS-0.78/t/uncat_write.t
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Bio-NEXUS-0.78/t/data/compliant/
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Bio-NEXUS-0.78/t/data/compliant/01_basic.nex
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Bio-NEXUS-0.78/t/data/compliant/01_taxa-labels-squarebrackets.nex
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Bio-NEXUS-0.78/t/data/compliant/02_assumptions-block_options_01.nex
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Bio-NEXUS-0.78/t/data/compliant/02_assumptions-block_options_02.nex
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Bio-NEXUS-0.78/t/data/compliant/02_character-polymorphic-doublequotes.nex
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Bio-NEXUS-0.78/t/data/compliant/02_character-polymorphic-uncertain.nex
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Bio-NEXUS-0.78/t/data/compliant/02_character-polymorphic.nex
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Bio-NEXUS-0.78/t/data/compliant/02_character-state-frequency.nex
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Bio-NEXUS-0.78/t/data/compliant/02_character-uncertain.nex
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Bio-NEXUS-0.78/t/data/compliant/02_characters-block_format_01.nex
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Bio-NEXUS-0.78/t/data/compliant/02_characters-block_format_02.nex
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Bio-NEXUS-0.78/t/data/compliant/02_characters-block_initial.nex
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Bio-NEXUS-0.78/t/data/compliant/02_notes-text.nex
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Bio-NEXUS-0.78/t/data/compliant/02_wtset-scores.nex
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Bio-NEXUS-0.78/t/data/compliant/04_block_level_methods.nex
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Bio-NEXUS-0.78/t/data/compliant/04_charactersblock_methods_01.nex
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Bio-NEXUS-0.78/t/data/compliant/04_charactersblock_methods_02.nex
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Bio-NEXUS-0.78/t/data/compliant/04_charactersblock_methods_03.nex
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Bio-NEXUS-0.78/t/data/compliant/04_charactersblock_methods_04.nex
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Bio-NEXUS-0.78/t/data/compliant/04_charactersblock_methods_05.nex
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Bio-NEXUS-0.78/t/data/compliant/04_characterstatelabels_05.nex
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Bio-NEXUS-0.78/t/data/compliant/04_equals_methods.nex
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Bio-NEXUS-0.78/t/data/compliant/04_object-file-equality_01.nex
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Bio-NEXUS-0.78/t/data/compliant/04_object-file-equality_02.nex
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Bio-NEXUS-0.78/t/data/compliant/04_private-commands.nex
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Bio-NEXUS-0.78/t/data/compliant/04_shared_commands_01.nex
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Bio-NEXUS-0.78/t/data/compliant/04_shared_commands_02.nex
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Bio-NEXUS-0.78/t/data/compliant/04_shared_commands_03.nex
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Bio-NEXUS-0.78/t/data/compliant/04_shared_commands_04.nex
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Bio-NEXUS-0.78/t/data/compliant/04_shared_commands_05.nex
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Bio-NEXUS-0.78/t/data/compliant/barns-combined.nex
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Bio-NEXUS-0.78/t/data/compliant/basic-bush-dos.nex
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Bio-NEXUS-0.78/t/data/compliant/basic-bush-mac.nex
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Bio-NEXUS-0.78/t/data/compliant/basic-bush-unix.nex
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Bio-NEXUS-0.78/t/data/compliant/basic-bush.nex
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Bio-NEXUS-0.78/t/data/compliant/basic-ladder.nex
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Bio-NEXUS-0.78/t/data/compliant/basic-rake.nex
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Bio-NEXUS-0.78/t/data/compliant/basic-trees.nex
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Bio-NEXUS-0.78/t/data/compliant/Bird_Ovomucoids.nex
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Bio-NEXUS-0.78/t/data/compliant/char-interleave.nex
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Bio-NEXUS-0.78/t/data/compliant/char-matrix-spaces.nex
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Bio-NEXUS-0.78/t/data/compliant/characters-block-interleave.nex
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Bio-NEXUS-0.78/t/data/compliant/characters-block-interleave2.nex
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Bio-NEXUS-0.78/t/data/compliant/data-block_clustalw.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_interleave_lower.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_interleave_lower_nodiag.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_interleave_rect_nodiag.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_interleave_upper.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_interleave_upper_nodiag.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_lower.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_lower_no-diag.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_rect.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_upper.nex
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Bio-NEXUS-0.78/t/data/compliant/dist_upper_no-diag.nex
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Bio-NEXUS-0.78/t/data/compliant/example1.nex
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Bio-NEXUS-0.78/t/data/compliant/FaresWolfeCCT.nex
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Bio-NEXUS-0.78/t/data/compliant/HCRT_all_orths_pep1_msfed1.aln.nxs
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Bio-NEXUS-0.78/t/data/compliant/history-block_probab-distrib.nex
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Bio-NEXUS-0.78/t/data/compliant/Human_mt_DNA.nex
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Bio-NEXUS-0.78/t/data/compliant/intrablock-comment.nex
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Bio-NEXUS-0.78/t/data/compliant/Kingdoms_DNA.nex
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Bio-NEXUS-0.78/t/data/compliant/KOG0003.nex
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Bio-NEXUS-0.78/t/data/compliant/long-names.nex
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Bio-NEXUS-0.78/t/data/compliant/Marsupial_Wolf.nex
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Bio-NEXUS-0.78/t/data/compliant/multiline-intrablock-comment.nex
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Bio-NEXUS-0.78/t/data/compliant/Omland-Orioles.nex
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Bio-NEXUS-0.78/t/data/compliant/Omland-Ravens.nex
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Bio-NEXUS-0.78/t/data/compliant/Primate_mtDNA.nex
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Bio-NEXUS-0.78/t/data/compliant/quoted-strings1.nex
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Bio-NEXUS-0.78/t/data/compliant/quoted-strings2.nex
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Bio-NEXUS-0.78/t/data/compliant/radical-whitespace.nex
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Bio-NEXUS-0.78/t/data/compliant/really-long-names.nex
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Bio-NEXUS-0.78/t/data/compliant/simple_taxa_and_chars.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family10i.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family1nlw.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family2alw.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family3il.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family4nl.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family5alw.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family6iw.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family7n.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family8a.nex
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Bio-NEXUS-0.78/t/data/compliant/SPAN_Family9iw.nex
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Bio-NEXUS-0.78/t/data/compliant/temp.nex
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Bio-NEXUS-0.78/t/data/compliant/top-level-comment.nex
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Bio-NEXUS-0.78/t/data/compliant/tree-nhx.nex
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Bio-NEXUS-0.78/t/data/compliant/Treebase-chlamy-dna.nex
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Bio-NEXUS-0.78/t/data/compliant/Treebase-horsetails-classic.nex
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Bio-NEXUS-0.78/t/data/compliant/Treebase-horsetails-dna.nex
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Bio-NEXUS-0.78/t/data/compliant/Treebase-liverwort-rbcl.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-translate.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-basal-trifurcation.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-branchlength-negative.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-branchlength-scientific.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-branchlength-zero.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-cladogram.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-extended-root-branch.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-inode-labels-partial.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-inode-labels-quoted1.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-inode-labels-quoted2.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-inode-labels.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-quoted-string-name1.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-quoted-string-name2.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush-uneven.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-bush.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-ladder-cladogram.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-ladder-uneven.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-ladder.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-multiple-challenges.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-multiple.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-rake-cladogram.nex
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Bio-NEXUS-0.78/t/data/compliant/trees-tree-rake.nex
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Bio-NEXUS-0.78/t/data/compliant/trees_branch-support-values.nex
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Bio-NEXUS-0.78/t/data/compliant/unaligned_simple_01.nex
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Bio-NEXUS-0.78/t/data/compliant/UnaSmithHIV-both.nex
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Bio-NEXUS-0.78/lib/Bio/
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Bio-NEXUS-0.78/lib/Bio/NEXUS/
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Bio-NEXUS-0.78/lib/Bio/NEXUS.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/AssumptionsBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Block.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/CharactersBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/CodonsBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/DataBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/DistancesBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Functions.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/HistoryBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Matrix.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/NHXCmd.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Node.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/NotesBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/SetsBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/SpanBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/TaxaBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/TaxUnit.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/TaxUnitSet.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Tools/
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Tree.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/TreesBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/UnalignedBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/UnknownBlock.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Util/
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Bio-NEXUS-0.78/lib/Bio/NEXUS/WeightSet.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Util/Exceptions.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Util/Logger.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Tools/GraphicsParams.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Tools/NexModifier.pm
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Tools/NexPlott.swp
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Bio-NEXUS-0.78/lib/Bio/NEXUS/Tools/NexPlotter.pm
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Bio-NEXUS-0.78/exec/align2nex.pl
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Bio-NEXUS-0.78/exec/bugs.cmd.pl
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Bio-NEXUS-0.78/exec/bugs.pl
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Bio-NEXUS-0.78/exec/extract_taxset.pl
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Bio-NEXUS-0.78/exec/history.pl
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Bio-NEXUS-0.78/exec/jags.pl
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Bio-NEXUS-0.78/exec/newtonex.pl
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Bio-NEXUS-0.78/exec/nex2text_tree.pl
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Bio-NEXUS-0.78/exec/nexdiff.pl
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Bio-NEXUS-0.78/exec/nexdump.pl
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Bio-NEXUS-0.78/exec/nexfix.pl
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Bio-NEXUS-0.78/exec/nexplot.pl
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Bio-NEXUS-0.78/exec/nextool.pl
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Bio-NEXUS-0.78/exec/nexus-convert.pl
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Bio-NEXUS-0.78/exec/p3treeplot.pl
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Bio-NEXUS-0.78/exec/pppplot.pl
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Bio-NEXUS-0.78/exec/readin_tcoffee.pl
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Bio-NEXUS-0.78/exec/roundtrip.pl
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Bio-NEXUS-0.78/exec/setmaker.pl
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Bio-NEXUS-0.78/exec/tree2nex.pl
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Bio-NEXUS-0.78/exec/tree_equality.pl
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Bio-NEXUS-0.78/exec/tree_length.pl
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Bio-NEXUS-0.78/doc/buglist.txt
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Bio-NEXUS-0.78/doc/._changes.txt
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Bio-NEXUS-0.78/doc/changes.txt
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Bio-NEXUS-0.78/doc/example1.nex
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Bio-NEXUS-0.78/doc/Installation.pod
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Bio-NEXUS-0.78/doc/NEXUS_coverage.html
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Bio-NEXUS-0.78/doc/ToDo.txt
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Bio-NEXUS-0.78/doc/Tutorial.pod
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Bio-NEXUS-0.78/doc/UserManual.pod
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Bio-NEXUS-0.78/data/basic.nex
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Bio-NEXUS-0.78/data/color-my-taxsets.nex
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Bio-NEXUS-0.78/data/Liang_et_al_Figure.nex
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Bio-NEXUS-0.78/data/SPAN_Family3il.nex
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Bio-NEXUS-0.78/data/SPAN_Family3il.pdf
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Bio-NEXUS-0.78/data/SPAN_Family3il.ps
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Entering Bio-NEXUS-0.78
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Checking configure dependencies from META.yml
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Checking if you have ExtUtils::Install 1.46 ... Yes (2.04)
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Checking if you have Module::Build 0.38 ... Yes (0.4222)
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Running Build.PL
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Configuring Bio-NEXUS-0.78 ... Created MYMETA.yml and MYMETA.json
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Creating new 'Build' script for 'Bio-NEXUS' version '0.78'
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Checking dependencies from MYMETA.json ...
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Checking if you have Test::More 0 ... Yes (1.302078)
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OK
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Building and testing Bio-NEXUS-0.78 ... Building Bio-NEXUS
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t/_perl_module-loading.t ................ ok
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t/_perl_perlpod.t ....................... ok
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# Failed test 'Pod coverage on Bio::NEXUS::Tools::NexPlotter'
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# at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Test/Pod/Coverage.pm line 133.
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# Bio::NEXUS::Tools::NexPlotter: requiring 'Bio::NEXUS::Tools::NexPlotter' failed
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# Looks like you failed 1 test of 28.
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t/_perl_podcoverage.t ...................
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Dubious, test returned 1 (wstat 256, 0x100)
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Failed 1/28 subtests
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t/assumptionsblock_options.t ............ ok
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t/assumptionsblock_wtset-scores.t ....... ok
|
|
t/block_link-and-title.t ................ ok
|
|
t/charactersblock_methods-01.t .......... ok
|
|
|
|
# Failed test 'The char sequence of A taxon is correct'
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|
# at t/charactersblock_methods-02.t line 34.
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|
# got: '-MG----FSAG--DLKKGEKLFTTRCAQCHTLKEGEGNKV-----------GPALHG--'
|
|
# expected: '-MQVADISLQG--DAKKGANLFKTRCAQCHTLKAGEGNKI-----------GPELHG-?'
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|
# Looks like you failed 1 test of 30.
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|
t/charactersblock_methods-02.t ..........
|
|
Dubious, test returned 1 (wstat 256, 0x100)
|
|
Failed 1/30 subtests
|
|
t/command_unknown_exception.t ........... ok
|
|
t/matrix_character-state-frequency.t .... ok
|
|
t/matrix_charactersblock-interleave.t ... ok
|
|
t/matrix_historyblock-probab-distrib.t .. ok
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|
t/matrix_polymorphic-and-uncertain.t .... ok
|
|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
|
|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
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|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
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|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
|
|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
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|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
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|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
|
|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
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|
WARN Bio::NEXUS::AssumptionsBlock::add_otu_clone [$PREFIX/Bio/NEXUS/AssumptionsBlock.pm, 393] - Bio::NEXUS::AssumptionsBlock::add_otu_clone() method not fully implemented
|
|
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 813] - not fully implemented!
|
|
t/nexus_add-otu-clone.t ................. ok
|
|
t/nexus_block-level-commands.t .......... ok
|
|
t/nexus_taxa-labels-quoted.t ............ ok
|
|
t/nexus_taxa-labels-squarebrackets.t .... ok
|
|
t/nexus_taxa-labels.t ................... ok
|
|
t/nexus_wrong_format.t .................. ok
|
|
t/nhxcmd_parsing.t ...................... ok
|
|
t/notesblock_methods.t .................. skipped: The notes block implementation is not complete
|
|
t/tree_equals.t ......................... ok
|
|
t/tree_methods-01.t ..................... ok
|
|
t/tree_methods-02.t ..................... ok
|
|
WARN Bio::NEXUS::AssumptionsBlock::_validate_options [$PREFIX/Bio/NEXUS/AssumptionsBlock.pm, 208] - Missing argument 'options'
|
|
t/tree_parsing.t ........................ ok
|
|
t/tree_parsing_quotemeta.t .............. ok
|
|
t/tree_support-values.t ................. ok
|
|
t/treesblock_methods.t .................. ok
|
|
t/uncat_clone_methods.t ................. ok
|
|
t/uncat_datablock_clustalw.t ............ ok
|
|
t/uncat_equals_methods.t ................ ok
|
|
t/uncat_excessive_whitespace.t .......... ok
|
|
t/uncat_ntax-nchar-dimensions.t ......... ok
|
|
t/uncat_object-file-equality.t .......... ok
|
|
t/uncat_shared-commands.t ............... ok
|
|
t/uncat_todo.t .......................... ok
|
|
t/uncat_write.t ......................... ok
|
|
|
|
Test Summary Report
|
|
-------------------
|
|
t/_perl_podcoverage.t (Wstat: 256 Tests: 28 Failed: 1)
|
|
Failed test: 27
|
|
Non-zero exit status: 1
|
|
t/charactersblock_methods-02.t (Wstat: 256 Tests: 30 Failed: 1)
|
|
Failed test: 3
|
|
Non-zero exit status: 1
|
|
t/nexus_wrong_format.t (Wstat: 0 Tests: 1 Failed: 0)
|
|
TODO passed: 1
|
|
t/uncat_ntax-nchar-dimensions.t (Wstat: 0 Tests: 4 Failed: 0)
|
|
TODO passed: 3
|
|
Files=37, Tests=581, 3 wallclock secs ( 0.10 usr 0.02 sys + 1.94 cusr 0.10 csys = 2.16 CPU)
|
|
Result: FAIL
|
|
Failed 2/37 test programs. 2/581 subtests failed.
|
|
! Installing Bio::NEXUS failed. See /home/ryan/.cpanm/work/1492971452.19233/build.log for details. Retry with --force to force install it.
|
|
FAIL
|
|
Command [cpanm --reinstall --verbose Bio::NEXUS] terminated with exit code 1 ($? = 256) under the following perl environment:
|
|
Command terminated with non-zero status.
|
|
|
|
|
|
Current perl:
|
|
Name: perl-blead
|
|
Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
|
|
Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
|
|
Compiled at: Mar 30 2017 03:10:09
|
|
|
|
perlbrew:
|
|
version: 0.78
|
|
ENV:
|
|
PERLBREW_ROOT: /home/ryan/perl5/perlbrew
|
|
PERLBREW_HOME: /home/ryan/.perlbrew
|
|
PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
|
|
PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
|