273 lines
12 KiB
Text
273 lines
12 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493401433.2410
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::Graphics::WiggleCompressed () on cpanmetadb ...
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Unpacking Bio-Graphics-2.07.tar.gz
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--> Working on Bio::Graphics::WiggleCompressed
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Fetching http://www.cpan.org/authors/id/L/LD/LDS/Bio-Graphics-2.07.tar.gz ... OK
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Bio-Graphics-2.07/
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Bio-Graphics-2.07/t/
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Bio-Graphics-2.07/t/data/
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Bio-Graphics-2.07/t/data/t1/
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Bio-Graphics-2.07/t/data/t1/version1.gif
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Bio-Graphics-2.07/t/data/t1/version1.png
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Bio-Graphics-2.07/t/data/t1/version2.gif
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Bio-Graphics-2.07/t/data/t1/version2.png
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Bio-Graphics-2.07/t/data/t1/version3.gif
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Bio-Graphics-2.07/t/data/t1/version3.png
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Bio-Graphics-2.07/t/data/t1/version4.png
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Bio-Graphics-2.07/t/data/t1/version5.png
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Bio-Graphics-2.07/t/data/t1/version6.png
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Bio-Graphics-2.07/t/data/t1/version7.png
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Bio-Graphics-2.07/t/data/t1/version8.png
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Bio-Graphics-2.07/t/data/t1/version9.gif
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Bio-Graphics-2.07/t/data/t1/version9.png
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Bio-Graphics-2.07/t/data/t1/version10.png
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Bio-Graphics-2.07/t/data/t1/version11.gif
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Bio-Graphics-2.07/t/data/t1/version11.png
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Bio-Graphics-2.07/t/data/t2/
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Bio-Graphics-2.07/t/data/t2/version1.gif
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Bio-Graphics-2.07/t/data/t2/version1.png
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Bio-Graphics-2.07/t/data/t2/version2.gif
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Bio-Graphics-2.07/t/data/t2/version2.png
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Bio-Graphics-2.07/t/data/t2/version3.gif
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Bio-Graphics-2.07/t/data/t2/version3.png
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Bio-Graphics-2.07/t/data/t2/version4.png
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Bio-Graphics-2.07/t/data/t2/version5.png
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Bio-Graphics-2.07/t/data/t2/version6.png
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Bio-Graphics-2.07/t/data/t2/version7.png
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Bio-Graphics-2.07/t/data/t2/version8.png
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Bio-Graphics-2.07/t/data/t2/version9.png
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Bio-Graphics-2.07/t/data/t2/version10.png
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Bio-Graphics-2.07/t/data/t2/version11.png
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Bio-Graphics-2.07/t/data/t2/version12.png
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Bio-Graphics-2.07/t/data/t2/version13.png
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Bio-Graphics-2.07/t/data/t2/version14.gif
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Bio-Graphics-2.07/t/data/t2/version14.png
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Bio-Graphics-2.07/t/data/t2/version15.png
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Bio-Graphics-2.07/t/data/t2/version16.gif
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Bio-Graphics-2.07/t/data/t2/version16.png
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Bio-Graphics-2.07/t/data/t2/version17.gif
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Bio-Graphics-2.07/t/data/t2/version17.png
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Bio-Graphics-2.07/t/data/t3/
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Bio-Graphics-2.07/t/data/t3/version1.gif
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Bio-Graphics-2.07/t/data/t3/version1.png
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Bio-Graphics-2.07/t/data/t3/version2.gif
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Bio-Graphics-2.07/t/data/t3/version2.png
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Bio-Graphics-2.07/t/data/t3/version3.gif
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Bio-Graphics-2.07/t/data/t3/version3.png
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Bio-Graphics-2.07/t/data/t3/version4.png
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Bio-Graphics-2.07/t/data/t3/version5.png
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Bio-Graphics-2.07/t/data/t3/version6.png
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Bio-Graphics-2.07/t/data/t3/version7.png
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Bio-Graphics-2.07/t/data/t3/version8.gif
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Bio-Graphics-2.07/t/data/t3/version8.png
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Bio-Graphics-2.07/t/data/t3/version9.png
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Bio-Graphics-2.07/t/data/t3/version10.gif
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Bio-Graphics-2.07/t/data/t3/version10.png
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Bio-Graphics-2.07/t/data/t3/version11.gif
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Bio-Graphics-2.07/t/data/t3/version11.png
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Bio-Graphics-2.07/t/data/t3/version12.gif
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Bio-Graphics-2.07/t/data/t3/version12.png
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Bio-Graphics-2.07/t/data/feature_data.txt
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Bio-Graphics-2.07/t/data/wig_data.wig
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Bio-Graphics-2.07/t/Wiggle.t
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Bio-Graphics-2.07/t/BioGraphics.t
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Bio-Graphics-2.07/eg/
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Bio-Graphics-2.07/eg/testit2.pl
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Bio-Graphics-2.07/eg/testit3.pl
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Bio-Graphics-2.07/eg/feature_data.gff
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Bio-Graphics-2.07/eg/feature_data.txt
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Bio-Graphics-2.07/eg/testit.pl
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Bio-Graphics-2.07/lib/
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Bio-Graphics-2.07/lib/Bio/
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Bio-Graphics-2.07/lib/Bio/Graphics.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/
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Bio-Graphics-2.07/lib/Bio/Graphics/FeatureFile/
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Bio-Graphics-2.07/lib/Bio/Graphics/FeatureFile/Iterator.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Util.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/dashed_line.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/allele_tower.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/repeating_shape.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/redgreen_box.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/pentagram.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/smoothing.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/protein.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/three_letters.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/ex.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/pairplot.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/segmented_keyglyph.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/stackedplot.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/splice_site.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/processed_transcript.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/wiggle_xyplot.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/toomany.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/line.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/whiskerplot.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/ruler_arrow.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/text_in_box.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/merged_alignment.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/weighted_arrow.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/crossbox.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/translation.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/hybrid_plot.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/heat_map_ideogram.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/group.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/redgreen_segment.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/pinsertion.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/span.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/rndrect.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/minmax.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/fixedwidth.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/flag.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/christmas_arrow.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/ideogram.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/cds.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/box.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/rainbow_gene.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/wiggle_whiskers.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/graded_segments.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/dna.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/dot.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/two_bolts.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/gene.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/ternary_plot.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/hat.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/primers.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/heat_map.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/segments.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/ellipse.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/image.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/diamond.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/transcript.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/anchored_arrow.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/broken_line.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/saw_teeth.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/Factory.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/ragged_ends.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/xyplot.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/generic.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/extending_arrow.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/spectrogram.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/so_transcript.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/tic_tac_toe.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/merge_parts.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/triangle.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/wave.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/arrow.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/lightning.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/alignment.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/wiggle_box.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/oval.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/wiggle_density.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/phylo_align.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/transcript2.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/wiggle_minmax.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/cross.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/dumbbell.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/heterogeneous_segments.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/trace.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/track.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph/hidden.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Pictogram.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Glyph.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Wiggle/
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Bio-Graphics-2.07/lib/Bio/Graphics/Wiggle/Loader.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/ConfiguratorI.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/RendererI.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/DrawTransmembrane.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/FeatureFile.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/WiggleCompressed.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Wiggle.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Feature.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/FeatureDir.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/FeatureBase.pm
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Bio-Graphics-2.07/lib/Bio/Graphics/Panel.pm
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Bio-Graphics-2.07/README
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Bio-Graphics-2.07/scripts/
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Bio-Graphics-2.07/scripts/contig_draw.pl
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Bio-Graphics-2.07/scripts/glyph_help.pl
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Bio-Graphics-2.07/scripts/search_overview.pl
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Bio-Graphics-2.07/scripts/render_msa.pl
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Bio-Graphics-2.07/scripts/frend.pl
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Bio-Graphics-2.07/scripts/feature_draw.pl
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Bio-Graphics-2.07/Changes
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Bio-Graphics-2.07/Build.PL
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Bio-Graphics-2.07/Makefile.PL
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Bio-Graphics-2.07/META.yml
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Bio-Graphics-2.07/DISCLAIMER.txt
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Bio-Graphics-2.07/README.bioperl
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Bio-Graphics-2.07/MANIFEST
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Entering Bio-Graphics-2.07
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Checking configure dependencies from META.yml
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Checking if you have Module::Build 0.38 ... Yes (0.4222)
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Checking if you have ExtUtils::Install 1.46 ... Yes (2.04)
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Running Build.PL
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Configuring Bio-Graphics-2.07 ... Checking prerequisites...
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recommends:
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* Bio::SCF is not installed
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ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
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of the modules indicated above before proceeding with this installation
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Created MYMETA.yml and MYMETA.json
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Creating new 'Build' script for 'Bio-Graphics' version '2.07'
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Checking dependencies from MYMETA.json ...
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Checking if you have GD 2.3 ... Yes (2.66)
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Checking if you have Bio::Root::Version 1.005009001 ... Yes (1.007001)
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Checking if you have Statistics::Descriptive 2.6 ... Yes (3.0612)
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OK
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Building and testing Bio-Graphics-2.07 ... Building Bio-Graphics
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# Failed test at t/BioGraphics.t line 188.
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# Failed test at t/BioGraphics.t line 188.
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Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/function(\s+)([a-z0-9_]+)(\s*){ <-- HERE (.*?)}/ at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Inline/Echo.pm line 25.
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Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/function(\s+)([a-z0-9_]+)(\s*){ <-- HERE (.*?)}/ at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Inline/Nouse.pm line 28.
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# Failed test at t/BioGraphics.t line 188.
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# Looks like you failed 3 tests of 52.
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t/BioGraphics.t ..
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Dubious, test returned 3 (wstat 768, 0x300)
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Failed 3/52 subtests
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t/Wiggle.t ....... ok
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Test Summary Report
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-------------------
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t/BioGraphics.t (Wstat: 768 Tests: 52 Failed: 3)
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Failed tests: 4-6
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Non-zero exit status: 3
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Files=2, Tests=62, 1 wallclock secs ( 0.02 usr 0.01 sys + 0.84 cusr 0.02 csys = 0.89 CPU)
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Result: FAIL
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Failed 1/2 test programs. 3/62 subtests failed.
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! Installing Bio::Graphics::WiggleCompressed failed. See /home/ryan/.cpanm/work/1493401433.2410/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose Bio::Graphics::WiggleCompressed] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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