215 lines
11 KiB
Text
215 lines
11 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493622779.4837
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::GMOD () on cpanmetadb ...
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Unpacking Bio-GMOD-0.028.tar.gz
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--> Working on Bio::GMOD
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Fetching http://www.cpan.org/authors/id/T/TW/TWH/Bio-GMOD-0.028.tar.gz ... OK
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Bio-GMOD-0.028/
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Bio-GMOD-0.028/bin/
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Bio-GMOD-0.028/bin/gmod_check_versions.PLS
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Bio-GMOD-0.028/bin/gmod_fetch_genes.PLS
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Bio-GMOD-0.028/bin/gmod_monitor_installation-wormbase.PLS
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Bio-GMOD-0.028/bin/gmod_monitor_installation.PLS
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Bio-GMOD-0.028/bin/gmod_standard_urls.PLS
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Bio-GMOD-0.028/bin/gmod_update_installation-wormbase.PLS
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Bio-GMOD-0.028/bin/gmod_update_installation.PLS
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Bio-GMOD-0.028/cgi-bin/
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Bio-GMOD-0.028/cgi-bin/defaults.wormbase.PLS
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Bio-GMOD-0.028/cgi-bin/README
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Bio-GMOD-0.028/cgi-bin/version.wormbase.PLS
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Bio-GMOD-0.028/Changes
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Bio-GMOD-0.028/conf/
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Bio-GMOD-0.028/conf/wormbase_update_defaults.cfg
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Bio-GMOD-0.028/conf/wormbase_update_defaults.private.cfg
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Bio-GMOD-0.028/docs/
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Bio-GMOD-0.028/docs/Bio-GMOD-introduction.pod
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Bio-GMOD-0.028/docs/CPAN-namespace_proposal.txt
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Bio-GMOD-0.028/dtd/
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Bio-GMOD-0.028/dtd/defaults.dtd
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Bio-GMOD-0.028/dtd/version.dtd
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Bio-GMOD-0.028/GMOD/
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Bio-GMOD-0.028/GMOD/Adaptor/
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Bio-GMOD-0.028/GMOD/Adaptor/FlyBase.pm
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Bio-GMOD-0.028/GMOD/Adaptor/generic.pm
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Bio-GMOD-0.028/GMOD/Adaptor/SGD.pm
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Bio-GMOD-0.028/GMOD/Adaptor/WormBase.pm
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Bio-GMOD-0.028/GMOD/Adaptor.pm
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Bio-GMOD-0.028/GMOD/Admin/
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Bio-GMOD-0.028/GMOD/Admin/Archive/
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Bio-GMOD-0.028/GMOD/Admin/Archive/WormBase.pm
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Bio-GMOD-0.028/GMOD/Admin/Archive.pm
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Bio-GMOD-0.028/GMOD/Admin/Monitor/
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Bio-GMOD-0.028/GMOD/Admin/Monitor/acedb.pm
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Bio-GMOD-0.028/GMOD/Admin/Monitor/blat.pm
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Bio-GMOD-0.028/GMOD/Admin/Monitor/httpd.pm
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Bio-GMOD-0.028/GMOD/Admin/Monitor/mysqld.pm
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Bio-GMOD-0.028/GMOD/Admin/Monitor/WormBase.pm
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Bio-GMOD-0.028/GMOD/Admin/Monitor.pm
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Bio-GMOD-0.028/GMOD/Admin/Update/
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Bio-GMOD-0.028/GMOD/Admin/Update/WormBase.pm
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Bio-GMOD-0.028/GMOD/Admin/Update.pm
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Bio-GMOD-0.028/GMOD/Query/
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Bio-GMOD-0.028/GMOD/Query/FlyBase.pm
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Bio-GMOD-0.028/GMOD/Query/WormBase.pm
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Bio-GMOD-0.028/GMOD/Query.pm
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Bio-GMOD-0.028/GMOD/StandardURLs.pm
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Bio-GMOD-0.028/GMOD/Util/
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Bio-GMOD-0.028/GMOD/Util/CheckVersions/
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Bio-GMOD-0.028/GMOD/Util/CheckVersions/WormBase.pm
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Bio-GMOD-0.028/GMOD/Util/CheckVersions.pm
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Bio-GMOD-0.028/GMOD/Util/Mirror.pm
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Bio-GMOD-0.028/GMOD/Util/Rearrange.pm
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Bio-GMOD-0.028/GMOD/Util/Status.pm
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Bio-GMOD-0.028/GMOD.pm
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Bio-GMOD-0.028/install_util/
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Bio-GMOD-0.028/install_util/cgi_install.PLS
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Bio-GMOD-0.028/install_util/conf_install.PLS
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Bio-GMOD-0.028/install_util/gbrowse_ppm_install.PLS
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Bio-GMOD-0.028/install_util/GuessDirectories.pm
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Bio-GMOD-0.028/install_util/htdocs_install.PLS
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Bio-GMOD-0.028/Makefile.PL
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Bio-GMOD-0.028/MANIFEST
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Bio-GMOD-0.028/META.yml
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Bio-GMOD-0.028/README
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Bio-GMOD-0.028/t/
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Bio-GMOD-0.028/t/acedb.t
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Bio-GMOD-0.028/t/Adaptor.t
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Bio-GMOD-0.028/t/Archive.t
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Bio-GMOD-0.028/t/BioGMOD.t
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Bio-GMOD-0.028/t/CheckVersions.t
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Bio-GMOD-0.028/t/CheckVersionsWormBase.t
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Bio-GMOD-0.028/t/httpd.t
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Bio-GMOD-0.028/t/Mirror.t
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Bio-GMOD-0.028/t/More.pm
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Bio-GMOD-0.028/t/mysqld.t
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Bio-GMOD-0.028/t/Query.t
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Bio-GMOD-0.028/t/QueryWormBase.t
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Bio-GMOD-0.028/t/Rearrange.t
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Bio-GMOD-0.028/t/StandardURLs.t
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Bio-GMOD-0.028/t/Status.t
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Bio-GMOD-0.028/t/Update.t
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Bio-GMOD-0.028/t/UpdateWormBase.t
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Bio-GMOD-0.028/TODO
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Bio-GMOD-0.028/xml/
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Bio-GMOD-0.028/xml/defaults.xml
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Bio-GMOD-0.028/xml/supported_mods.xml
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Entering Bio-GMOD-0.028
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Checking configure dependencies from META.yml
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Running Makefile.PL
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Configuring Bio-GMOD-0.028 ...
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** Bio::GMOD::Monitor Tests **
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Do you want to run the Bio::GMOD::Monitor::* tests (further configuration follows) y/n [n] n
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----------------------------------------------
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Bio::GMOD File Paths
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BIN /usr/local/bin
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NONROOT
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MOD
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CGIBIN
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(Run perl Makefile.PL -h for help on changing)
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----------------------------------------------
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Checking if your kit is complete...
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Looks good
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Generating a Unix-style Makefile
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Writing Makefile for Bio::GMOD
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have Net::SMTP 2.26 ... Yes (3.10)
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Checking if you have MIME::Lite 3.01 ... Yes (3.030)
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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Checking if you have LWP::UserAgent 2.023 ... Yes (6.26)
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OK
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Building and testing Bio-GMOD-0.028 ... cp GMOD/StandardURLs.pm blib/lib/Bio/GMOD/StandardURLs.pm
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cp GMOD.pm blib/lib/Bio/GMOD.pm
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cp GMOD/Admin/Monitor/mysqld.pm blib/lib/Bio/GMOD/Admin/Monitor/mysqld.pm
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cp GMOD/Adaptor/generic.pm blib/lib/Bio/GMOD/Adaptor/generic.pm
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cp GMOD/Admin/Monitor.pm blib/lib/Bio/GMOD/Admin/Monitor.pm
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cp GMOD/Util/CheckVersions/WormBase.pm blib/lib/Bio/GMOD/Util/CheckVersions/WormBase.pm
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cp GMOD/Admin/Monitor/httpd.pm blib/lib/Bio/GMOD/Admin/Monitor/httpd.pm
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cp GMOD/Admin/Archive/WormBase.pm blib/lib/Bio/GMOD/Admin/Archive/WormBase.pm
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cp GMOD/Admin/Update.pm blib/lib/Bio/GMOD/Admin/Update.pm
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cp GMOD/Admin/Update/WormBase.pm blib/lib/Bio/GMOD/Admin/Update/WormBase.pm
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cp GMOD/Adaptor/SGD.pm blib/lib/Bio/GMOD/Adaptor/SGD.pm
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cp GMOD/Adaptor.pm blib/lib/Bio/GMOD/Adaptor.pm
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cp GMOD/Util/Mirror.pm blib/lib/Bio/GMOD/Util/Mirror.pm
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cp GMOD/Admin/Monitor/WormBase.pm blib/lib/Bio/GMOD/Admin/Monitor/WormBase.pm
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cp GMOD/Query/WormBase.pm blib/lib/Bio/GMOD/Query/WormBase.pm
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cp GMOD/Adaptor/WormBase.pm blib/lib/Bio/GMOD/Adaptor/WormBase.pm
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cp GMOD/Query.pm blib/lib/Bio/GMOD/Query.pm
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cp GMOD/Util/Rearrange.pm blib/lib/Bio/GMOD/Util/Rearrange.pm
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cp GMOD/Admin/Monitor/acedb.pm blib/lib/Bio/GMOD/Admin/Monitor/acedb.pm
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cp GMOD/Admin/Archive.pm blib/lib/Bio/GMOD/Admin/Archive.pm
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cp GMOD/Util/CheckVersions.pm blib/lib/Bio/GMOD/Util/CheckVersions.pm
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cp GMOD/Util/Status.pm blib/lib/Bio/GMOD/Util/Status.pm
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cp GMOD/Adaptor/FlyBase.pm blib/lib/Bio/GMOD/Adaptor/FlyBase.pm
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cp GMOD/Admin/Monitor/blat.pm blib/lib/Bio/GMOD/Admin/Monitor/blat.pm
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cp GMOD/Query/FlyBase.pm blib/lib/Bio/GMOD/Query/FlyBase.pm
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" bin/gmod_check_versions.PLS bin/gmod_check_versions.pl
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Extracting gmod_check_versions.pl (with variable substitutions)
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cp bin/gmod_check_versions.pl blib/script/gmod_check_versions.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_check_versions.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" bin/gmod_fetch_genes.PLS bin/gmod_fetch_genes.pl
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Extracting gmod_fetch_genes.pl (with variable substitutions)
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cp bin/gmod_fetch_genes.pl blib/script/gmod_fetch_genes.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_fetch_genes.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" bin/gmod_monitor_installation-wormbase.PLS bin/gmod_monitor_installation-wormbase.pl
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Extracting gmod_monitor_installation-wormbase.pl (with variable substitutions)
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cp bin/gmod_monitor_installation-wormbase.pl blib/script/gmod_monitor_installation-wormbase.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_monitor_installation-wormbase.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" bin/gmod_monitor_installation.PLS bin/gmod_monitor_installation.pl
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Extracting gmod_monitor_installation.pl (with variable substitutions)
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cp bin/gmod_monitor_installation.pl blib/script/gmod_monitor_installation.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_monitor_installation.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" bin/gmod_standard_urls.PLS bin/gmod_standard_urls.pl
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Extracting gmod_standard_urls.pl (with variable substitutions)
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cp bin/gmod_standard_urls.pl blib/script/gmod_standard_urls.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_standard_urls.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" bin/gmod_update_installation-wormbase.PLS bin/gmod_update_installation-wormbase.pl
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Extracting gmod_update_installation-wormbase.pl (with variable substitutions)
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cp bin/gmod_update_installation-wormbase.pl blib/script/gmod_update_installation-wormbase.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_update_installation-wormbase.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" bin/gmod_update_installation.PLS bin/gmod_update_installation.pl
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Extracting gmod_update_installation.pl (with variable substitutions)
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cp bin/gmod_update_installation.pl blib/script/gmod_update_installation.pl
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_update_installation.pl
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Manifying 7 pod documents
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Manifying 25 pod documents
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" cgi-bin/defaults.wormbase.PLS cgi-bin/defaults.wormbase
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Extracting defaults.wormbase (with variable substitutions)
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" cgi-bin/version.wormbase.PLS cgi-bin/version.wormbase
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Extracting version.wormbase (with variable substitutions)
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"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" install_util/cgi_install.PLS install_util/cgi_install.pl
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Extracting cgi_install.pl (with variable substitutions)
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PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
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Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::acedb::ISA at t/acedb.t line 40.
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# Looks like your test exited with 1 just after 1.
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t/acedb.t ..................
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Dubious, test returned 1 (wstat 256, 0x100)
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All 1 subtests passed
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[2017 May 01 00:15] Couldn't fetch defaults script:
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500 Can't connect to dev.wormbase.org:80
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You may be working offline. Defaults will be populated from adaptor object...
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t/Adaptor.t ................ ok
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t/Archive.t ................ ok
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[2017 May 01 00:17] Couldn't fetch defaults script:
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500 Can't connect to dev.wormbase.org:80
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You may be working offline. Defaults will be populated from adaptor object...
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[2017 May 01 00:19] Couldn't fetch defaults script:
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500 Can't connect to dev.wormbase.org:80
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You may be working offline. Defaults will be populated from adaptor object...
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[2017 May 01 00:21] Couldn't fetch defaults script:
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500 Can't connect to dev.wormbase.org:80
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You may be working offline. Defaults will be populated from adaptor object...
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