246 lines
11 KiB
Text
246 lines
11 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493066488.32206
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::FeatureIO () on cpanmetadb ...
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Unpacking Bio-FeatureIO-1.6.905.tar.gz
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--> Working on Bio::FeatureIO
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Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/Bio-FeatureIO-1.6.905.tar.gz ... OK
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Bio-FeatureIO-1.6.905
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Bio-FeatureIO-1.6.905/Changes
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Bio-FeatureIO-1.6.905/t
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Bio-FeatureIO-1.6.905/t/bed.t
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Bio-FeatureIO-1.6.905/t/gff.t
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Bio-FeatureIO-1.6.905/t/ptt.t
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Bio-FeatureIO-1.6.905/LICENSE
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Bio-FeatureIO-1.6.905/dist.ini
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Bio-FeatureIO-1.6.905/META.yml
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Bio-FeatureIO-1.6.905/MANIFEST
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Bio-FeatureIO-1.6.905/README.md
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Bio-FeatureIO-1.6.905/META.json
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Bio-FeatureIO-1.6.905/Makefile.PL
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Bio-FeatureIO-1.6.905/t/data
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Bio-FeatureIO-1.6.905/t/data/1.bed
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Bio-FeatureIO-1.6.905/t/FeatureIO.t
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Bio-FeatureIO-1.6.905/t/FeatureIO.x
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Bio-FeatureIO-1.6.905/t/vecscreen.t
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Bio-FeatureIO-1.6.905/t/data/dna1.fa
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Bio-FeatureIO-1.6.905/t/00-compile.t
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Bio-FeatureIO-1.6.905/t/data/test.ptt
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Bio-FeatureIO-1.6.905/t/data/hybrid1.gff3
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Bio-FeatureIO-1.6.905/t/data/hybrid2.gff3
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Bio-FeatureIO-1.6.905/lib/Bio
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Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO.pm
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Bio-FeatureIO-1.6.905/t/release-mojibake.t
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Bio-FeatureIO-1.6.905/t/data/knownGene.gff3
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Bio-FeatureIO-1.6.905/t/data/directives.gff3
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Bio-FeatureIO-1.6.905/t/data/knownGene2.gff3
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Bio-FeatureIO-1.6.905/t/release-pod-syntax.t
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Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO
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Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO/bed.pm
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Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO/gff.pm
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Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO/gtf.pm
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Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO/ptt.pm
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Bio-FeatureIO-1.6.905/t/release-pod-coverage.t
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Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO/interpro.pm
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Bio-FeatureIO-1.6.905/lib/Bio/SeqFeature
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Bio-FeatureIO-1.6.905/lib/Bio/SeqFeature/Annotated.pm
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Bio-FeatureIO-1.6.905/t/release-SeqFeature
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Bio-FeatureIO-1.6.905/t/release-SeqFeature/Annotated.t
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Bio-FeatureIO-1.6.905/t/data/vecscreen_simple.test_output
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Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO/vecscreen_simple.pm
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Entering Bio-FeatureIO-1.6.905
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Checking configure dependencies from META.json
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Checking if you have ExtUtils::MakeMaker 6.58 ... Yes (7.24)
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Running Makefile.PL
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Configuring Bio-FeatureIO-1.6.905 ... Warning: prerequisite XML::DOM::XPath 0 not found.
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Checking if your kit is complete...
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Looks good
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Generating a Unix-style Makefile
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Writing Makefile for Bio::FeatureIO
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have Bio::Annotation::SimpleValue 0 ... Yes (undef)
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Checking if you have URI::Escape 0 ... Yes (3.31)
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Checking if you have Bio::AnnotatableI 0 ... Yes (undef)
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Checking if you have Bio::SeqFeature::AnnotationAdaptor 0 ... Yes (undef)
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Checking if you have Bio::SeqFeature::TypedSeqFeatureI 0 ... Yes (undef)
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Checking if you have Bio::OntologyIO 0 ... Yes (undef)
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Checking if you have Bio::Root::Test 0 ... Yes (undef)
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Checking if you have strict 0 ... Yes (1.11)
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Checking if you have warnings 0 ... Yes (1.37)
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Checking if you have Bio::Location::Simple 0 ... Yes (undef)
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Checking if you have IO::Handle 0 ... Yes (1.36)
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Checking if you have Bio::Annotation::Collection 0 ... Yes (undef)
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Checking if you have Symbol 0 ... Yes (1.08)
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Checking if you have Test::More 0 ... Yes (1.302078)
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Checking if you have XML::DOM::XPath 0 ... No
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Checking if you have Bio::Root::IO 0 ... Yes (undef)
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Checking if you have Bio::Annotation::Comment 0 ... Yes (undef)
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Checking if you have Bio::Annotation::DBLink 0 ... Yes (undef)
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Checking if you have Data::Dumper 0 ... Yes (2.161)
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Checking if you have Bio::Tools::GFF 0 ... Yes (undef)
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Checking if you have Bio::Root::Root 0 ... Yes (undef)
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Checking if you have Bio::Annotation::Target 0 ... Yes (undef)
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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Checking if you have Bio::Ontology::OntologyStore 0 ... Yes (undef)
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Checking if you have Bio::SeqFeature::Generic 0 ... Yes (undef)
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Checking if you have base 0 ... Yes (2.23)
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Checking if you have constant 0 ... Yes (1.33)
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Checking if you have Bio::LocatableSeq 0 ... Yes (undef)
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Checking if you have Bio::Annotation::OntologyTerm 0 ... Yes (undef)
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Checking if you have XML::DOM 0 ... Yes (1.46)
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Checking if you have IPC::Open3 0 ... Yes (1.20)
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Checking if you have Tree::DAG_Node 0 ... Yes (1.29)
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Checking if you have Scalar::Util 0 ... Yes (1.47)
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Checking if you have File::Spec 0 ... Yes (3.62)
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Checking if you have Bio::SeqIO 0 ... Yes (undef)
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Checking if you have Bio::FeatureHolderI 0 ... Yes (undef)
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Searching XML::DOM::XPath (0) on cpanmetadb ...
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Unpacking XML-DOM-XPath-0.14.tar.gz
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OK
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==> Found dependencies: XML::DOM::XPath
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--> Working on XML::DOM::XPath
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Fetching http://www.cpan.org/authors/id/M/MI/MIROD/XML-DOM-XPath-0.14.tar.gz ... OK
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XML-DOM-XPath-0.14/
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XML-DOM-XPath-0.14/t/
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XML-DOM-XPath-0.14/t/pod_coverage.t
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XML-DOM-XPath-0.14/t/xmlxpath_30lang.t
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XML-DOM-XPath-0.14/t/non_ascii.xml
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XML-DOM-XPath-0.14/t/xmlxpath_22name_select.t
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XML-DOM-XPath-0.14/t/test_non_ascii.t
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XML-DOM-XPath-0.14/t/xmlxpath_21allnodes.t
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XML-DOM-XPath-0.14/t/xmlxpath_15axisfol_sib.t
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XML-DOM-XPath-0.14/t/xmlxpath_05attrib.t
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XML-DOM-XPath-0.14/t/xmlxpath_13axisparent.t
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XML-DOM-XPath-0.14/t/xmlxpath_16axisprec_sib.t
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XML-DOM-XPath-0.14/t/xmlxpath_03star.t
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XML-DOM-XPath-0.14/t/xmlxpath_17axisfollowing.t
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XML-DOM-XPath-0.14/t/xmlxpath_04pos.t
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XML-DOM-XPath-0.14/t/pod.t
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XML-DOM-XPath-0.14/t/1.t
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XML-DOM-XPath-0.14/t/xmlxpath_02descendant.t
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XML-DOM-XPath-0.14/t/xmlxpath_09a_string_length.t
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XML-DOM-XPath-0.14/t/xmlxpath_01basic.t
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XML-DOM-XPath-0.14/t/xmlxpath_12axisdescendant.t
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XML-DOM-XPath-0.14/t/xmlxpath_10pipe.t
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XML-DOM-XPath-0.14/t/xmlxpath_09string_length.t
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XML-DOM-XPath-0.14/t/xmlxpath_23func.t
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XML-DOM-XPath-0.14/t/xmlxpath_06attrib_val.t
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XML-DOM-XPath-0.14/t/test_bugs.t
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XML-DOM-XPath-0.14/t/xmlxpath_07count.t
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XML-DOM-XPath-0.14/t/xmlxpath_19axisd_or_s.t
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XML-DOM-XPath-0.14/t/xmlxpath_25scope.t
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XML-DOM-XPath-0.14/t/xmlxpath_28ancestor2.t
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XML-DOM-XPath-0.14/t/xmlxpath_08name.t
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XML-DOM-XPath-0.14/t/xmlxpath_20axisa_or_s.t
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XML-DOM-XPath-0.14/t/xmlxpath_29desc_with_predicate.t
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XML-DOM-XPath-0.14/t/test_xml_xpath_and_xml_dom_xpath.t
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XML-DOM-XPath-0.14/t/xmlxpath_26predicate.t
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XML-DOM-XPath-0.14/t/xmlxpath_14axisancestor.t
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XML-DOM-XPath-0.14/t/xmlxpath_18axispreceding.t
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XML-DOM-XPath-0.14/t/xmlxpath_24namespaces.t
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XML-DOM-XPath-0.14/Changes
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XML-DOM-XPath-0.14/MANIFEST
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XML-DOM-XPath-0.14/META.yml
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XML-DOM-XPath-0.14/XPath.pm
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XML-DOM-XPath-0.14/Makefile.PL
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XML-DOM-XPath-0.14/README
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Entering XML-DOM-XPath-0.14
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Checking configure dependencies from META.yml
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Running Makefile.PL
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Configuring XML-DOM-XPath-0.14 ... Checking if your kit is complete...
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Looks good
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Generating a Unix-style Makefile
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Writing Makefile for XML::DOM::XPath
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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Checking if you have XML::DOM 0 ... Yes (1.46)
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Checking if you have XML::XPathEngine 0.1 ... Yes (0.14)
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OK
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Building and testing XML-DOM-XPath-0.14 ... cp XPath.pm blib/lib/XML/DOM/XPath.pm
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Manifying 1 pod document
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PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
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t/1.t ................................. ok
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t/pod.t ............................... ok
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t/pod_coverage.t ...................... ok
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t/test_bugs.t ......................... ok
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The encoding pragma is no longer supported at t/test_non_ascii.t line 10.
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BEGIN failed--compilation aborted at t/test_non_ascii.t line 10.
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# Looks like your test exited with 2 before it could output anything.
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t/test_non_ascii.t ....................
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Dubious, test returned 2 (wstat 512, 0x200)
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Failed 10/10 subtests
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t/test_xml_xpath_and_xml_dom_xpath.t .. ok
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t/xmlxpath_01basic.t .................. ok
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t/xmlxpath_02descendant.t ............. ok
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t/xmlxpath_03star.t ................... ok
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t/xmlxpath_04pos.t .................... ok
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t/xmlxpath_05attrib.t ................. ok
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t/xmlxpath_06attrib_val.t ............. ok
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t/xmlxpath_07count.t .................. ok
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t/xmlxpath_08name.t ................... ok
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t/xmlxpath_09a_string_length.t ........ ok
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t/xmlxpath_09string_length.t .......... ok
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t/xmlxpath_10pipe.t ................... ok
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t/xmlxpath_12axisdescendant.t ......... ok
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t/xmlxpath_13axisparent.t ............. ok
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t/xmlxpath_14axisancestor.t ........... ok
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t/xmlxpath_15axisfol_sib.t ............ ok
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t/xmlxpath_16axisprec_sib.t ........... ok
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t/xmlxpath_17axisfollowing.t .......... ok
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t/xmlxpath_18axispreceding.t .......... ok
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t/xmlxpath_19axisd_or_s.t ............. ok
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t/xmlxpath_20axisa_or_s.t ............. ok
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t/xmlxpath_21allnodes.t ............... ok
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t/xmlxpath_22name_select.t ............ ok
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t/xmlxpath_23func.t ................... ok
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t/xmlxpath_24namespaces.t ............. ok
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t/xmlxpath_25scope.t .................. ok
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t/xmlxpath_26predicate.t .............. ok
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t/xmlxpath_28ancestor2.t .............. ok
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t/xmlxpath_29desc_with_predicate.t .... ok
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t/xmlxpath_30lang.t ................... ok
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Test Summary Report
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-------------------
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t/test_non_ascii.t (Wstat: 512 Tests: 0 Failed: 0)
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Non-zero exit status: 2
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Parse errors: Bad plan. You planned 10 tests but ran 0.
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Files=35, Tests=183, 14 wallclock secs ( 0.07 usr 0.00 sys + 1.76 cusr 0.15 csys = 1.98 CPU)
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Result: FAIL
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Failed 1/35 test programs. 0/183 subtests failed.
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Makefile:842: recipe for target 'test_dynamic' failed
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make: *** [test_dynamic] Error 255
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! Installing XML::DOM::XPath failed. See /home/ryan/.cpanm/work/1493066488.32206/build.log for details. Retry with --force to force install it.
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! Installing the dependencies failed: Module 'XML::DOM::XPath' is not installed
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! Bailing out the installation for Bio-FeatureIO-1.6.905.
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FAIL
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Command [cpanm --reinstall --verbose Bio::FeatureIO] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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