163 lines
7.9 KiB
Text
163 lines
7.9 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493065340.25959
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::Draw::FeatureStack () on cpanmetadb ...
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Unpacking Bio-Draw-FeatureStack-0.03.tar.gz
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--> Working on Bio::Draw::FeatureStack
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Fetching http://www.cpan.org/authors/id/C/CH/CHRISFR/Bio-Draw-FeatureStack-0.03.tar.gz ... OK
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Bio-Draw-FeatureStack-0.03/
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Bio-Draw-FeatureStack-0.03/Changes
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Bio-Draw-FeatureStack-0.03/MANIFEST
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Bio-Draw-FeatureStack-0.03/Makefile.PL
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Bio-Draw-FeatureStack-0.03/README
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Bio-Draw-FeatureStack-0.03/lib/
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Bio-Draw-FeatureStack-0.03/lib/Bio/
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Bio-Draw-FeatureStack-0.03/lib/Bio/Draw/
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Bio-Draw-FeatureStack-0.03/lib/Bio/Draw/FeatureStack.pm
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Bio-Draw-FeatureStack-0.03/t/
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Bio-Draw-FeatureStack-0.03/t/alt_feature.t
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Bio-Draw-FeatureStack-0.03/t/basecase.t
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Bio-Draw-FeatureStack-0.03/t/data/
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Bio-Draw-FeatureStack-0.03/t/data/genbank_file1.gb
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Bio-Draw-FeatureStack-0.03/t/data/gene_models_manuscript.gff3
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Bio-Draw-FeatureStack-0.03/t/feature_offset.t
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Bio-Draw-FeatureStack-0.03/t/figures_manuscript.t
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Bio-Draw-FeatureStack-0.03/t/flip_minus.t
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Bio-Draw-FeatureStack-0.03/t/genbank.t
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Bio-Draw-FeatureStack-0.03/t/ignore_utr.t
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Bio-Draw-FeatureStack-0.03/t/images/
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Bio-Draw-FeatureStack-0.03/t/images/alt_feature.png
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Bio-Draw-FeatureStack-0.03/t/images/alt_feature.svg
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Bio-Draw-FeatureStack-0.03/t/images/basecase.png
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Bio-Draw-FeatureStack-0.03/t/images/basecase.svg
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Bio-Draw-FeatureStack-0.03/t/images/feature_offset.png
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Bio-Draw-FeatureStack-0.03/t/images/feature_offset.svg
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Bio-Draw-FeatureStack-0.03/t/images/flip_minus1.png
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Bio-Draw-FeatureStack-0.03/t/images/flip_minus1.svg
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Bio-Draw-FeatureStack-0.03/t/images/flip_minus2.png
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Bio-Draw-FeatureStack-0.03/t/images/flip_minus2.svg
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Bio-Draw-FeatureStack-0.03/t/images/genbank.png
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Bio-Draw-FeatureStack-0.03/t/images/ignore_utr.png
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Bio-Draw-FeatureStack-0.03/t/images/ignore_utr.svg
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Bio-Draw-FeatureStack-0.03/t/images/intron_size.png
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Bio-Draw-FeatureStack-0.03/t/images/intron_size2.png
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure1.html
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure1.png
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure1.svg
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure2.html
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure2.png
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure2.svg
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure3.html
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure3.png
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Bio-Draw-FeatureStack-0.03/t/images/manuscript_figure3.svg
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Bio-Draw-FeatureStack-0.03/t/images/ruler.png
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Bio-Draw-FeatureStack-0.03/t/images/ruler.svg
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Bio-Draw-FeatureStack-0.03/t/images/seperator.png
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Bio-Draw-FeatureStack-0.03/t/images/seperator.svg
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Bio-Draw-FeatureStack-0.03/t/images/skip_transcript.png
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Bio-Draw-FeatureStack-0.03/t/images/skip_transcript.svg
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Bio-Draw-FeatureStack-0.03/t/images/span.png
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Bio-Draw-FeatureStack-0.03/t/images/span.svg
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Bio-Draw-FeatureStack-0.03/t/intron_size.t
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Bio-Draw-FeatureStack-0.03/t/ruler.t
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Bio-Draw-FeatureStack-0.03/t/seperator.t
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Bio-Draw-FeatureStack-0.03/t/skip_transcript.t
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Bio-Draw-FeatureStack-0.03/t/span.t
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Entering Bio-Draw-FeatureStack-0.03
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META.yml/json not found. Creating skeleton for it.
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Running Makefile.PL
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Configuring Bio-Draw-FeatureStack-0.03 ... Checking if your kit is complete...
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Looks good
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Generating a Unix-style Makefile
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Writing Makefile for Bio::Draw::FeatureStack
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have Bio::Graphics::Glyph::decorated_gene 0 ... Yes (undef)
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Checking if you have GD::SVG 0.32 ... Yes (0.33)
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Checking if you have Test::Exception 0 ... Yes (0.43)
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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Checking if you have Bio::Graphics 2.02 ... Yes (2.40)
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OK
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Building and testing Bio-Draw-FeatureStack-0.01 ... cp lib/Bio/Draw/FeatureStack.pm blib/lib/Bio/Draw/FeatureStack.pm
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Manifying 1 pod document
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PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
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Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/function(\s+)([a-z0-9_]+)(\s*){ <-- HERE (.*?)}/ at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Inline/Echo.pm line 25.
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Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/function(\s+)([a-z0-9_]+)(\s*){ <-- HERE (.*?)}/ at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Inline/Nouse.pm line 28.
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t/alt_feature.t ......... ok
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t/basecase.t ............ ok
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# Failed test 'Generation of feature_offset figures'
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# at t/feature_offset.t line 19.
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# died: Undefined subroutine &Bio::Graphics::Glyph::decorated_transcript::get_decorations_as_features called at /home/ryan/.cpanm/work/1493065340.25959/Bio-Draw-FeatureStack-0.03/blib/lib/Bio/Draw/FeatureStack.pm line 439.
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# Looks like you planned 11 tests but ran 6.
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# Looks like you failed 1 test of 6 run.
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t/feature_offset.t ......
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Dubious, test returned 1 (wstat 256, 0x100)
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Failed 6/11 subtests
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# Failed test 'Generation of manuscript figure 1'
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# at t/figures_manuscript.t line 17.
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# died: Undefined subroutine &Bio::Graphics::Glyph::decorated_transcript::get_decorations_as_features called at /home/ryan/.cpanm/work/1493065340.25959/Bio-Draw-FeatureStack-0.03/blib/lib/Bio/Draw/FeatureStack.pm line 439.
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# Failed test 'Generation of manuscript figure 2'
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# at t/figures_manuscript.t line 18.
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# died: Can't locate object method "formatting" via package "GD::Font" at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/GD/SVG.pm line 996.
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# Looks like you planned 27 tests but ran 15.
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# Looks like you failed 2 tests of 15 run.
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t/figures_manuscript.t ..
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Dubious, test returned 2 (wstat 512, 0x200)
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Failed 14/27 subtests
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t/flip_minus.t .......... ok
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t/genbank.t ............. ok
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t/ignore_utr.t .......... ok
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t/intron_size.t ......... ok
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t/ruler.t ............... ok
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t/seperator.t ........... ok
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t/skip_transcript.t ..... ok
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t/span.t ................ ok
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Test Summary Report
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-------------------
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t/feature_offset.t (Wstat: 256 Tests: 6 Failed: 1)
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Failed test: 6
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Non-zero exit status: 1
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Parse errors: Bad plan. You planned 11 tests but ran 6.
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t/figures_manuscript.t (Wstat: 512 Tests: 15 Failed: 2)
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Failed tests: 7-8
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Non-zero exit status: 2
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Parse errors: Bad plan. You planned 27 tests but ran 15.
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Files=12, Tests=132, 36 wallclock secs ( 0.04 usr 0.00 sys + 4.14 cusr 0.26 csys = 4.44 CPU)
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Result: FAIL
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Failed 2/12 test programs. 3/132 subtests failed.
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Makefile:846: recipe for target 'test_dynamic' failed
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make: *** [test_dynamic] Error 255
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! Installing Bio::Draw::FeatureStack failed. See /home/ryan/.cpanm/work/1493065340.25959/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose Bio::Draw::FeatureStack] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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