295 lines
15 KiB
Text
295 lines
15 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493313144.29257
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::Das::ProServer::SourceAdaptor::edgeexpress () on cpanmetadb ...
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Unpacking EdgeExpressDB_0.953h.tar.gz
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--> Working on Bio::Das::ProServer::SourceAdaptor::edgeexpress
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Fetching http://www.cpan.org/authors/id/J/JM/JMS/EdgeExpressDB_0.953h.tar.gz ... OK
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EdgeExpressDB_0.953/
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EdgeExpressDB_0.953/Changes
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EdgeExpressDB_0.953/EdgeExpressDB.xcodeproj/
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EdgeExpressDB_0.953/EdgeExpressDB.xcodeproj/jessica.mode1
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EdgeExpressDB_0.953/EdgeExpressDB.xcodeproj/jessica.pbxuser
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EdgeExpressDB_0.953/EdgeExpressDB.xcodeproj/project.pbxproj
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EdgeExpressDB_0.953/install.sh
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EdgeExpressDB_0.953/lib/
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EdgeExpressDB_0.953/lib/Bio/
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EdgeExpressDB_0.953/lib/Bio/Das/
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EdgeExpressDB_0.953/lib/Bio/Das/ProServer/
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EdgeExpressDB_0.953/lib/Bio/Das/ProServer/SourceAdaptor/
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EdgeExpressDB_0.953/lib/Bio/Das/ProServer/SourceAdaptor/edgeexpress.pm
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EdgeExpressDB_0.953/lib/Bio/Das/ProServer/SourceAdaptor/Transport/
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EdgeExpressDB_0.953/lib/Bio/Das/ProServer/SourceAdaptor/Transport/edgeexpress.pm
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EdgeExpressDB_0.953/lib/EEDB/
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EdgeExpressDB_0.953/lib/EEDB/Assembly.pm
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EdgeExpressDB_0.953/lib/EEDB/Chrom.pm
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EdgeExpressDB_0.953/lib/EEDB/ChromChunk.pm
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EdgeExpressDB_0.953/lib/EEDB/Edge.pm
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EdgeExpressDB_0.953/lib/EEDB/EdgeSet.pm
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EdgeExpressDB_0.953/lib/EEDB/EdgeSource.pm
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EdgeExpressDB_0.953/lib/EEDB/Experiment.pm
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EdgeExpressDB_0.953/lib/EEDB/Expression.pm
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EdgeExpressDB_0.953/lib/EEDB/Feature.pm
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EdgeExpressDB_0.953/lib/EEDB/FeatureSet.pm
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EdgeExpressDB_0.953/lib/EEDB/FeatureSource.pm
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EdgeExpressDB_0.953/lib/EEDB/Metadata.pm
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EdgeExpressDB_0.953/lib/EEDB/MetadataSet.pm
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EdgeExpressDB_0.953/lib/EEDB/Peer.pm
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EdgeExpressDB_0.953/lib/EEDB/Symbol.pm
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EdgeExpressDB_0.953/lib/EEDB/Tools/
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EdgeExpressDB_0.953/lib/EEDB/Tools/BEDLoader.pm
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EdgeExpressDB_0.953/lib/EEDB/Tools/MultiLoader.pm
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EdgeExpressDB_0.953/lib/EEDB/Tools/OverlapCompare.pm
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EdgeExpressDB_0.953/lib/EEDB/Tools/PSLLoader.pm
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EdgeExpressDB_0.953/lib/EEDB.pm
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EdgeExpressDB_0.953/Makefile.PL
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EdgeExpressDB_0.953/README
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EdgeExpressDB_0.953/scripts/
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EdgeExpressDB_0.953/scripts/eedb_chromChunkTool.pl
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EdgeExpressDB_0.953/scripts/eedb_create_instance.pl
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EdgeExpressDB_0.953/scripts/eedb_dump.pl
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EdgeExpressDB_0.953/scripts/eedb_getchunk.pl
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EdgeExpressDB_0.953/scripts/eedb_getedge.pl
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EdgeExpressDB_0.953/scripts/eedb_getfeature.pl
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EdgeExpressDB_0.953/scripts/eedb_getsource.pl
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EdgeExpressDB_0.953/scripts/eedb_load_affychip.pl
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EdgeExpressDB_0.953/scripts/eedb_load_bed.pl
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EdgeExpressDB_0.953/scripts/eedb_load_edges.pl
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EdgeExpressDB_0.953/scripts/eedb_load_expression.pl
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EdgeExpressDB_0.953/scripts/eedb_load_expression_table.pl
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EdgeExpressDB_0.953/scripts/eedb_load_gff3.pl
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EdgeExpressDB_0.953/scripts/eedb_load_mapexpress.pl
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EdgeExpressDB_0.953/scripts/eedb_load_metadata.pl
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EdgeExpressDB_0.953/scripts/eedb_load_OSC_tagmap_rescue.pl
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EdgeExpressDB_0.953/scripts/eedb_load_swissprot.pl
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EdgeExpressDB_0.953/scripts/eedb_mirror_source.pl
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EdgeExpressDB_0.953/scripts/eedb_search.pl
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EdgeExpressDB_0.953/scripts/eedb_sync_entrezgene.pl
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EdgeExpressDB_0.953/scripts/EXAMPLES
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EdgeExpressDB_0.953/sql/
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EdgeExpressDB_0.953/sql/assembly_chrom_data.sql
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EdgeExpressDB_0.953/sql/schema.sql
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EdgeExpressDB_0.953/sql/schema.sqlite
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EdgeExpressDB_0.953/testdata/
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EdgeExpressDB_0.953/testdata/hg18_refgene_2009jan15.bed.gz
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EdgeExpressDB_0.953/testdata/mm9_refgene_2009feb16.bed.gz
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EdgeExpressDB_0.953/USER_INSTALL
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EdgeExpressDB_0.953/www/
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EdgeExpressDB_0.953/www/edgeexpress/
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EdgeExpressDB_0.953/www/edgeexpress/.htaccess
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EdgeExpressDB_0.953/www/edgeexpress/about/
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EdgeExpressDB_0.953/www/edgeexpress/about/index.html
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EdgeExpressDB_0.953/www/edgeexpress/about/Supplementary_note_1.pdf
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EdgeExpressDB_0.953/www/edgeexpress/about/Supplementary_note_2.pdf
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EdgeExpressDB_0.953/www/edgeexpress/cgi/
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EdgeExpressDB_0.953/www/edgeexpress/cgi/edgeexpress.cgi
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EdgeExpressDB_0.953/www/edgeexpress/cgi/edgeexpress.fcgi
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EdgeExpressDB_0.953/www/edgeexpress/cgi/edgeXpression.cgi
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EdgeExpressDB_0.953/www/edgeexpress/cgi/eedb_ck_genes.cgi
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EdgeExpressDB_0.953/www/edgeexpress/cgi/eedb_region.cgi
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EdgeExpressDB_0.953/www/edgeexpress/cgi/EXAMPLE_eedb_server.conf
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EdgeExpressDB_0.953/www/edgeexpress/cgi/getnetwork.cgi
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EdgeExpressDB_0.953/www/edgeexpress/cgi/probeExpression.cgi
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EdgeExpressDB_0.953/www/edgeexpress/contents/
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EdgeExpressDB_0.953/www/edgeexpress/contents/contents.js
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EdgeExpressDB_0.953/www/edgeexpress/contents/index.html
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EdgeExpressDB_0.953/www/edgeexpress/css/
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EdgeExpressDB_0.953/www/edgeexpress/css/dbinfo.css
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EdgeExpressDB_0.953/www/edgeexpress/css/edgeExpress.css
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EdgeExpressDB_0.953/www/edgeexpress/css/edgeXpress.css
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EdgeExpressDB_0.953/www/edgeexpress/css/f4_style.css
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EdgeExpressDB_0.953/www/edgeexpress/css/f4_style.css.080314
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EdgeExpressDB_0.953/www/edgeexpress/css/f4_style.css.080724
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EdgeExpressDB_0.953/www/edgeexpress/css/footer.css
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EdgeExpressDB_0.953/www/edgeexpress/css/header.css
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EdgeExpressDB_0.953/www/edgeexpress/css/main.css
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EdgeExpressDB_0.953/www/edgeexpress/css/style.css
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EdgeExpressDB_0.953/www/edgeexpress/css/style_ie.css
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EdgeExpressDB_0.953/www/edgeexpress/css/subnav_bg.gif
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EdgeExpressDB_0.953/www/edgeexpress/css/top_menu.css
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EdgeExpressDB_0.953/www/edgeexpress/images/
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EdgeExpressDB_0.953/www/edgeexpress/images/arrow.png
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EdgeExpressDB_0.953/www/edgeexpress/images/bullet1.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/bullet3.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/bullet4.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/CellDesigner3.5.1.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/contact.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/cyto-logo-smaller.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/dimer.png
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EdgeExpressDB_0.953/www/edgeexpress/images/doc.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/Entrez_Gene.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/fantom4-logo.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/fantom4-logo.png
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EdgeExpressDB_0.953/www/edgeexpress/images/fantom4-logo2.png
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EdgeExpressDB_0.953/www/edgeexpress/images/fantom4-logo3.png
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EdgeExpressDB_0.953/www/edgeexpress/images/fantom4-logo3.png.bak
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EdgeExpressDB_0.953/www/edgeexpress/images/fantom4-logo_orig.png
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EdgeExpressDB_0.953/www/edgeexpress/images/graph.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/graph2.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/HAMMER.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/head_logo_green2.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/history.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/loading.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/miRNA.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/nav.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/osc_color.png
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EdgeExpressDB_0.953/www/edgeexpress/images/photo.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/publication.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/question.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/riken-logo.png
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EdgeExpressDB_0.953/www/edgeexpress/images/search.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/search2.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/self.png
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EdgeExpressDB_0.953/www/edgeexpress/images/tab_base_graph2.gif
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EdgeExpressDB_0.953/www/edgeexpress/images/Thumbs.db
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EdgeExpressDB_0.953/www/edgeexpress/images/up.gif
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EdgeExpressDB_0.953/www/edgeexpress/index.html
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EdgeExpressDB_0.953/www/edgeexpress/jscript/
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EdgeExpressDB_0.953/www/edgeexpress/jscript/common.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/dhtmlHistory.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/eedb_common.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/eedb_search.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/excanvas.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/fantom4_info.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/._prototype-1.5.1.1.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/prototype-1.5.1.1.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/._prototype-1.5.1.2.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/prototype-1.5.1.2.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/._prototype-1.6.0.2.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/prototype-1.6.0.2.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/._prototype-1.6.0.3.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/prototype-1.6.0.3.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/_notes/
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/_notes/dwsync.xml
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryAccordion.css
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryAccordion.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryCollapsiblePanel.css
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryCollapsiblePanel.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryData.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryDataExtensions.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryDebug.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryEffects.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryHTMLDataSet.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryJSONDataSet.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryMenuBar.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryMenuBarDown.gif
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryMenuBarDownHover.gif
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryMenuBarHorizontal.css
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryMenuBarRight.gif
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryMenuBarRightHover.gif
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryMenuBarVertical.css
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryNestedJSONDataSet.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryNestedXMLDataSet.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryPagedView.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryTabbedPanels.css
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryTabbedPanels.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryURLUtils.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryUtils.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryValidationCheckbox.css
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryValidationCheckbox.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryValidationTextField.css
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryValidationTextField.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/SpryXML.js
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EdgeExpressDB_0.953/www/edgeexpress/jscript/SpryAssets/xpath.js
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EdgeExpressDB_0.953/www/edgeexpress/subnet/
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EdgeExpressDB_0.953/www/edgeexpress/subnet/index.html
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EdgeExpressDB_0.953/www/edgeexpress/subnet/subnet.js
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EdgeExpressDB_0.953/www/edgeexpress/view/
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EdgeExpressDB_0.953/www/edgeexpress/view/blank.html
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EdgeExpressDB_0.953/www/edgeexpress/view/chipOverflow.html
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EdgeExpressDB_0.953/www/edgeexpress/view/edgeExpress.js
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EdgeExpressDB_0.953/www/edgeexpress/view/geneOverflow.html
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EdgeExpressDB_0.953/www/edgeexpress/view/graphLoading.html
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EdgeExpressDB_0.953/www/edgeexpress/view/index.html
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EdgeExpressDB_0.953/www/edgeexpress/view/tfbsOverflow.html
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EdgeExpressDB_0.953/www/edgeexpress/view/tooltip.js
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Entering EdgeExpressDB_0.953
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META.yml/json not found. Creating skeleton for it.
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Running Makefile.PL
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Configuring EdgeExpressDB-0.953h ... Generating a Unix-style Makefile
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Writing Makefile for EEDB
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have DBD::mysql 3.0005 ... Yes (4.042)
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Checking if you have DBI 1.51 ... Yes (1.636)
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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Checking if you have Compress::Zlib 2.005 ... Yes (2.074)
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Checking if you have Time::HiRes 1.86 ... Yes (1.9741)
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Checking if you have MQdb 0.951 ... No
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Checking if you have XML::TreePP 0.33 ... Yes (0.43)
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Checking if you have Getopt::Long 2.35 ... Yes (2.49)
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Checking if you have Data::UUID 1.148 ... Yes (1.221)
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Checking if you have File::Temp 0.16 ... Yes (0.2304)
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Searching MQdb (0.951) on cpanmetadb ...
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Unpacking MQdb_0.954.tar.gz
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OK
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==> Found dependencies: MQdb
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--> Working on MQdb
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Fetching http://www.cpan.org/authors/id/J/JM/JMS/MQdb_0.954.tar.gz ... OK
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MQdb_0.954/
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MQdb_0.954/Changes
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MQdb_0.954/lib/
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MQdb_0.954/lib/MQdb/
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MQdb_0.954/lib/MQdb/Database.pm
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MQdb_0.954/lib/MQdb/DBObject.pm
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MQdb_0.954/lib/MQdb/DBStream.pm
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MQdb_0.954/lib/MQdb/MappedQuery.pm
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MQdb_0.954/lib/MQdb.pm
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MQdb_0.954/Makefile.PL
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MQdb_0.954/README
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Entering MQdb_0.954
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META.yml/json not found. Creating skeleton for it.
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Running Makefile.PL
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Configuring MQdb-0.954 ... Generating a Unix-style Makefile
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Writing Makefile for MQdb
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have DBD::SQLite 1.14 ... Yes (1.54)
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Checking if you have DBI 1.51 ... Yes (1.636)
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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Checking if you have DBD::mysql 3.0005 ... Yes (4.042)
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OK
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Building and testing MQdb-0.954 ... cp lib/MQdb.pm blib/lib/MQdb.pm
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cp lib/MQdb/Database.pm blib/lib/MQdb/Database.pm
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cp lib/MQdb/DBStream.pm blib/lib/MQdb/DBStream.pm
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cp lib/MQdb/MappedQuery.pm blib/lib/MQdb/MappedQuery.pm
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cp lib/MQdb/DBObject.pm blib/lib/MQdb/DBObject.pm
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Manifying 5 pod documents
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No tests defined for MQdb extension.
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Manifying 5 pod documents
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Appending installation info to /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0/x86_64-linux/perllocal.pod
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OK
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Successfully installed MQdb-0.954
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Installing /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/x86_64-linux/.meta/MQdb_0.954/install.json
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! Installing the dependencies failed: Missing version info for module 'MQdb'
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! Bailing out the installation for EEDB-0.953.
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1 distribution installed
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Command [cpanm --reinstall --verbose Bio::Das::ProServer::SourceAdaptor::edgeexpress] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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