211 lines
10 KiB
Text
211 lines
10 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493401427.2177
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::Das::ProServer::Config () on cpanmetadb ...
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Unpacking Bio-Das-1.02.tar.gz
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--> Working on Bio::Das::ProServer::Config
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Fetching http://www.cpan.org/authors/id/L/LD/LDS/Bio-Das-1.02.tar.gz ... OK
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Bio-Das-1.02/
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Bio-Das-1.02/t/
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Bio-Das-1.02/t/01das.t
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Bio-Das-1.02/eg/
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Bio-Das-1.02/eg/AGP/
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Bio-Das-1.02/eg/AGP/chrX.agp
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Bio-Das-1.02/eg/AGP/chrY.agp
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Bio-Das-1.02/eg/testfeaturebyname.pl
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Bio-Das-1.02/eg/testfeatures.pl
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Bio-Das-1.02/eg/testdsntypes.pl
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Bio-Das-1.02/eg/testdna.pl
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Bio-Das-1.02/eg/testpassword.pl
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Bio-Das-1.02/eg/test_map.pl
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Bio-Das-1.02/eg/testbadpassword.pl
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Bio-Das-1.02/eg/test_ssl.pl
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Bio-Das-1.02/eg/testmultipleservers.pl
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Bio-Das-1.02/eg/agpserver
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Bio-Das-1.02/eg/testtypes.pl
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Bio-Das-1.02/eg/proserver
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Bio-Das-1.02/eg/testnopassword.pl
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Bio-Das-1.02/eg/testauth.pl
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Bio-Das-1.02/Das/
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Bio-Das-1.02/Das/AGPServer/
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Bio-Das-1.02/Das/AGPServer/SQLStorage/
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Bio-Das-1.02/Das/AGPServer/SQLStorage/CSV/
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Bio-Das-1.02/Das/AGPServer/SQLStorage/CSV/DB.pm
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Bio-Das-1.02/Das/AGPServer/SQLStorage/MySQL/
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Bio-Das-1.02/Das/AGPServer/SQLStorage/MySQL/DB.pm
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Bio-Das-1.02/Das/AGPServer/Proxy.pm
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Bio-Das-1.02/Das/AGPServer/SQLStorage.pm
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Bio-Das-1.02/Das/AGPServer/Parser.pm
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Bio-Das-1.02/Das/AGPServer/Config.pm
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Bio-Das-1.02/Das/AGPServer/Daemon.pm
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Bio-Das-1.02/Das/HTTP/
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Bio-Das-1.02/Das/HTTP/Fetch.pm
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Bio-Das-1.02/Das/DSN.pm
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Bio-Das-1.02/Das/Util.pm
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Bio-Das-1.02/Das/ProServer/
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Bio-Das-1.02/Das/ProServer/Loader/
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Bio-Das-1.02/Das/ProServer/Loader/agp.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/cosmic.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/haplotype.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/interpro.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/bioseq.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/agp.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/image.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/snp.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/sts.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/gensat.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/oracle.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/wgetz.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/file.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/dbi.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/getz.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/getzc.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/Transport/generic.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/simple.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/swissprot.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor/trace.pm
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Bio-Das-1.02/Das/ProServer/SourceAdaptor.pm
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Bio-Das-1.02/Das/ProServer/Config.pm
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Bio-Das-1.02/Das/ProServer/Daemon.pm
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Bio-Das-1.02/Das/Map.pm
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Bio-Das-1.02/Das/FeatureIterator.pm
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Bio-Das-1.02/Das/Request/
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Bio-Das-1.02/Das/Request/Features.pm
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Bio-Das-1.02/Das/Request/Entry_points.pm
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Bio-Das-1.02/Das/Request/Dsn.pm
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Bio-Das-1.02/Das/Request/Sequences.pm
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Bio-Das-1.02/Das/Request/Dnas.pm
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Bio-Das-1.02/Das/Request/Feature2Segments.pm
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Bio-Das-1.02/Das/Request/Types.pm
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Bio-Das-1.02/Das/Request/Stylesheet.pm
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Bio-Das-1.02/Das/Request.pm
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Bio-Das-1.02/Das/Segment.pm
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Bio-Das-1.02/Das/TypeHandler.pm
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Bio-Das-1.02/Das/Feature.pm
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Bio-Das-1.02/Das/Stylesheet.pm
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Bio-Das-1.02/Das/Type.pm
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Bio-Das-1.02/Das.pm
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Bio-Das-1.02/Makefile.PL
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Bio-Das-1.02/META.yml
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Bio-Das-1.02/DISCLAIMER.txt
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Bio-Das-1.02/ChangeLog
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Bio-Das-1.02/MANIFEST
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Entering Bio-Das-1.02
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Checking configure dependencies from META.yml
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Running Makefile.PL
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Configuring Bio-Das-1.02 ... Checking if your kit is complete...
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Looks good
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Generating a Unix-style Makefile
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Writing Makefile for Bio::Das
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Writing MYMETA.yml and MYMETA.json
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Checking dependencies from MYMETA.json ...
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Checking if you have Bio::Root::Root 0 ... Yes (undef)
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Checking if you have LWP 5 ... Yes (6.26)
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Checking if you have HTML::Parser 3 ... Yes (3.72)
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Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
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Checking if you have Compress::Zlib 1 ... Yes (2.074)
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Checking if you have MIME::Base64 2.12 ... Yes (3.15)
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OK
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Building and testing Bio-Das-1.02 ... cp Das/ProServer/SourceAdaptor/image.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/image.pm
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cp Das/HTTP/Fetch.pm blib/lib/Bio/Das/HTTP/Fetch.pm
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cp Das/ProServer/SourceAdaptor/haplotype.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/haplotype.pm
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cp Das/ProServer/SourceAdaptor/bioseq.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/bioseq.pm
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cp Das/FeatureIterator.pm blib/lib/Bio/Das/FeatureIterator.pm
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cp Das/ProServer/SourceAdaptor/Transport/oracle.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm
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cp Das/ProServer/SourceAdaptor/Transport/getzc.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/getzc.pm
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cp Das/ProServer/SourceAdaptor/Transport/file.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm
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cp Das/ProServer/SourceAdaptor.pm blib/lib/Bio/Das/ProServer/SourceAdaptor.pm
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cp Das/AGPServer/SQLStorage/MySQL/DB.pm blib/lib/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm
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cp Das/ProServer/SourceAdaptor/cosmic.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/cosmic.pm
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cp Das/Feature.pm blib/lib/Bio/Das/Feature.pm
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cp Das/DSN.pm blib/lib/Bio/Das/DSN.pm
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cp Das/ProServer/Loader/agp.pm blib/lib/Bio/Das/ProServer/Loader/agp.pm
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cp Das/ProServer/SourceAdaptor/Transport/bioseqio.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm
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cp Das/ProServer/SourceAdaptor/Transport/wgetz.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/wgetz.pm
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cp Das/ProServer/SourceAdaptor/agp.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/agp.pm
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cp Das/AGPServer/SQLStorage/CSV/DB.pm blib/lib/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm
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cp Das/ProServer/SourceAdaptor/Transport/dbi.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm
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cp Das/Map.pm blib/lib/Bio/Das/Map.pm
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cp Das/AGPServer/Parser.pm blib/lib/Bio/Das/AGPServer/Parser.pm
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cp Das/AGPServer/SQLStorage.pm blib/lib/Bio/Das/AGPServer/SQLStorage.pm
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cp Das/ProServer/SourceAdaptor/gensat.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/gensat.pm
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cp Das/ProServer/SourceAdaptor/Transport/generic.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/generic.pm
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cp Das/AGPServer/Config.pm blib/lib/Bio/Das/AGPServer/Config.pm
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cp Das.pm blib/lib/Bio/Das.pm
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cp Das/ProServer/Config.pm blib/lib/Bio/Das/ProServer/Config.pm
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cp Das/AGPServer/Proxy.pm blib/lib/Bio/Das/AGPServer/Proxy.pm
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cp Das/ProServer/SourceAdaptor/Transport/getz.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm
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cp Das/AGPServer/Daemon.pm blib/lib/Bio/Das/AGPServer/Daemon.pm
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cp Das/ProServer/Daemon.pm blib/lib/Bio/Das/ProServer/Daemon.pm
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cp Das/Request/Dnas.pm blib/lib/Bio/Das/Request/Dnas.pm
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cp Das/ProServer/SourceAdaptor/snp.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/snp.pm
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cp Das/Request/Sequences.pm blib/lib/Bio/Das/Request/Sequences.pm
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cp Das/Request/Features.pm blib/lib/Bio/Das/Request/Features.pm
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cp Das/Request/Dsn.pm blib/lib/Bio/Das/Request/Dsn.pm
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cp Das/Request/Entry_points.pm blib/lib/Bio/Das/Request/Entry_points.pm
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cp Das/ProServer/SourceAdaptor/swissprot.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/swissprot.pm
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cp Das/Request.pm blib/lib/Bio/Das/Request.pm
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cp Das/TypeHandler.pm blib/lib/Bio/Das/TypeHandler.pm
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cp Das/Request/Types.pm blib/lib/Bio/Das/Request/Types.pm
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cp Das/ProServer/SourceAdaptor/simple.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/simple.pm
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cp Das/Type.pm blib/lib/Bio/Das/Type.pm
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cp Das/ProServer/SourceAdaptor/interpro.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/interpro.pm
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cp Das/Segment.pm blib/lib/Bio/Das/Segment.pm
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cp Das/ProServer/SourceAdaptor/trace.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/trace.pm
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cp Das/Util.pm blib/lib/Bio/Das/Util.pm
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cp Das/Request/Feature2Segments.pm blib/lib/Bio/Das/Request/Feature2Segments.pm
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cp Das/Request/Stylesheet.pm blib/lib/Bio/Das/Request/Stylesheet.pm
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cp Das/Stylesheet.pm blib/lib/Bio/Das/Stylesheet.pm
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cp Das/ProServer/SourceAdaptor/sts.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/sts.pm
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Manifying 28 pod documents
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Manifying 18 pod documents
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PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
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Can't call method "description" on an undefined value at t/01das.t line 49.
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t/01das.t ..
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Dubious, test returned 255 (wstat 65280, 0xff00)
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Failed 34/36 subtests
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Test Summary Report
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-------------------
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t/01das.t (Wstat: 65280 Tests: 4 Failed: 2)
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Failed tests: 3-4
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Non-zero exit status: 255
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Parse errors: Bad plan. You planned 36 tests but ran 4.
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Files=1, Tests=4, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.00 csys = 0.10 CPU)
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Result: FAIL
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Failed 1/1 test programs. 2/4 subtests failed.
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Makefile:1034: recipe for target 'test_dynamic' failed
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make: *** [test_dynamic] Error 255
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! Installing Bio::Das::ProServer::Config failed. See /home/ryan/.cpanm/work/1493401427.2177/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose Bio::Das::ProServer::Config] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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