299 lines
17 KiB
Text
299 lines
17 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493203741.28143
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching Bio::Community::Tools::RepresentativeIdConverter () on cpanmetadb ...
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Unpacking Bio-Community-0.001004.tar.gz
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--> Working on Bio::Community::Tools::RepresentativeIdConverter
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Fetching http://www.cpan.org/authors/id/F/FA/FANGLY/Bio-Community-0.001004.tar.gz ... OK
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Bio-Community-0.001004
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Bio-Community-0.001004/LICENSE
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Bio-Community-0.001004/README
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Bio-Community-0.001004/MANIFEST
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Bio-Community-0.001004/Changes
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Bio-Community-0.001004/META.yml
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Bio-Community-0.001004/META.json
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Bio-Community-0.001004/Build.PL
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Bio-Community-0.001004/xt
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Bio-Community-0.001004/xt/pod-coverage.t
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Bio-Community-0.001004/scripts
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Bio-Community-0.001004/scripts/bc_convert_files
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Bio-Community-0.001004/scripts/bc_relative_to_absolute
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Bio-Community-0.001004/scripts/bc_use_repr_id
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Bio-Community-0.001004/scripts/bc_get_info
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Bio-Community-0.001004/scripts/bc_summarize
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Bio-Community-0.001004/scripts/bc_manage_samples
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Bio-Community-0.001004/scripts/bc_measure_alpha
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Bio-Community-0.001004/scripts/bc_clean_shrapnel
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Bio-Community-0.001004/scripts/bc_measure_beta
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Bio-Community-0.001004/scripts/bc_remove_unexpected_members
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Bio-Community-0.001004/scripts/bc_rarefy
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Bio-Community-0.001004/scripts/bc_correct_misassignments
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Bio-Community-0.001004/lib
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Bio-Community-0.001004/lib/Bio
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Bio-Community-0.001004/lib/Bio/Community.pm
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Bio-Community-0.001004/lib/Bio/Community
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Bio-Community-0.001004/lib/Bio/Community/IO.pm
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Bio-Community-0.001004/lib/Bio/Community/TaxonomyUtils.pm
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Bio-Community-0.001004/lib/Bio/Community/Alpha.pm
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Bio-Community-0.001004/lib/Bio/Community/Member.pm
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Bio-Community-0.001004/lib/Bio/Community/Meta.pm
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Bio-Community-0.001004/lib/Bio/Community/Types.pm
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Bio-Community-0.001004/lib/Bio/Community/Tools
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Bio-Community-0.001004/lib/Bio/Community/Tools/Sampler.pm
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Bio-Community-0.001004/lib/Bio/Community/Tools/Summarizer.pm
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Bio-Community-0.001004/lib/Bio/Community/Tools/ShrapnelCleaner.pm
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Bio-Community-0.001004/lib/Bio/Community/Tools/Rarefier.pm
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Bio-Community-0.001004/lib/Bio/Community/Tools/Transformer.pm
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Bio-Community-0.001004/lib/Bio/Community/Tools/RepresentativeIdConverter.pm
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Bio-Community-0.001004/lib/Bio/Community/IO
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Bio-Community-0.001004/lib/Bio/Community/IO/FormatGuesser.pm
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Bio-Community-0.001004/lib/Bio/Community/IO/Driver
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Bio-Community-0.001004/lib/Bio/Community/IO/Driver/gaas.pm
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Bio-Community-0.001004/lib/Bio/Community/IO/Driver/qiime.pm
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Bio-Community-0.001004/lib/Bio/Community/IO/Driver/generic.pm
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Bio-Community-0.001004/lib/Bio/Community/IO/Driver/dummy.pm
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Bio-Community-0.001004/lib/Bio/Community/IO/Driver/unifrac.pm
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Bio-Community-0.001004/lib/Bio/Community/IO/Driver/biom.pm
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Bio-Community-0.001004/lib/Bio/Community/Meta
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Bio-Community-0.001004/lib/Bio/Community/Meta/Gamma.pm
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Bio-Community-0.001004/lib/Bio/Community/Meta/Beta.pm
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Bio-Community-0.001004/lib/Bio/Community/Role
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Bio-Community-0.001004/lib/Bio/Community/Role/IO.pm
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Bio-Community-0.001004/lib/Bio/Community/Role/PRNG.pm
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Bio-Community-0.001004/lib/Bio/Community/Role/Classified.pm
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Bio-Community-0.001004/lib/Bio/Community/Role/Weighted.pm
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Bio-Community-0.001004/lib/Bio/Community/Role/Table.pm
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Bio-Community-0.001004/lib/Bio/Community/Role/Locked.pm
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Bio-Community-0.001004/lib/Bio/Community/Role/Described.pm
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Bio-Community-0.001004/lib/Bio/Community/Role/Sequenced.pm
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Bio-Community-0.001004/t
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Bio-Community-0.001004/t/IO.t
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Bio-Community-0.001004/t/Alpha.t
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Bio-Community-0.001004/t/Community.t
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Bio-Community-0.001004/t/Meta.t
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Bio-Community-0.001004/t/Member.t
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Bio-Community-0.001004/t/Tools
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Bio-Community-0.001004/t/Tools/RepresentativeIdConverter.t
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Bio-Community-0.001004/t/Tools/Sampler.t
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Bio-Community-0.001004/t/Tools/ShrapnelCleaner.t
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Bio-Community-0.001004/t/Tools/Transformer.t
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Bio-Community-0.001004/t/Tools/Summarizer.t
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Bio-Community-0.001004/t/Tools/Rarefier.t
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Bio-Community-0.001004/t/IO
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Bio-Community-0.001004/t/IO/weights.t
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Bio-Community-0.001004/t/IO/FormatGuesser.t
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Bio-Community-0.001004/t/IO/Driver
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Bio-Community-0.001004/t/IO/Driver/generic.t
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Bio-Community-0.001004/t/IO/Driver/gaas.t
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Bio-Community-0.001004/t/IO/Driver/biom.t
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Bio-Community-0.001004/t/IO/Driver/unifrac.t
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Bio-Community-0.001004/t/IO/Driver/qiime.t
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Bio-Community-0.001004/t/Meta
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Bio-Community-0.001004/t/Meta/Beta.t
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Bio-Community-0.001004/t/Meta/Gamma.t
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Bio-Community-0.001004/t/data
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Bio-Community-0.001004/t/data/gg_99_otu_map.txt
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Bio-Community-0.001004/t/data/qiime_w_silva_taxo_L2.txt
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Bio-Community-0.001004/t/data/weights_otuid.txt
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Bio-Community-0.001004/t/data/lorem_ipsum.txt
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Bio-Community-0.001004/t/data/gaas_other.txt
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Bio-Community-0.001004/t/data/weights_2.txt
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Bio-Community-0.001004/t/data/weights_taxstring.txt
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Bio-Community-0.001004/t/data/biom_invalid.txt
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Bio-Community-0.001004/t/data/qiime_w_greengenes_taxo.txt
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Bio-Community-0.001004/t/data/gaas_compo.txt
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Bio-Community-0.001004/t/data/biom_rich_sparse.txt
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Bio-Community-0.001004/t/data/unifrac_quantitative.txt
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Bio-Community-0.001004/t/data/gaas_seq_compo.txt
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Bio-Community-0.001004/t/data/qiime_w_silva_taxo_and_dups.txt
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Bio-Community-0.001004/t/data/qiime_w_root.txt
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Bio-Community-0.001004/t/data/unifrac_quantitative_tricky.txt
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Bio-Community-0.001004/t/data/qiime_alt_header.txt
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Bio-Community-0.001004/t/data/biom_no_spp.txt
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Bio-Community-0.001004/t/data/weights_1.txt
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Bio-Community-0.001004/t/data/biom_float.txt
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Bio-Community-0.001004/t/data/table.txt
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Bio-Community-0.001004/t/data/table_mac.txt
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Bio-Community-0.001004/t/data/qiime_w_no_taxo.txt
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Bio-Community-0.001004/t/data/generic_table_win.txt
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Bio-Community-0.001004/t/data/generic_table.txt
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Bio-Community-0.001004/t/data/generic_table_mac.txt
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Bio-Community-0.001004/t/data/table_win.txt
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Bio-Community-0.001004/t/data/biom_dups.txt
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Bio-Community-0.001004/t/data/qiime_w_two_communities.txt
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Bio-Community-0.001004/t/data/to_merge_1.qiime
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Bio-Community-0.001004/t/data/biom_minimal_dense.txt
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Bio-Community-0.001004/t/data/to_merge_2.qiime
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Bio-Community-0.001004/t/data/table_2.txt
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Bio-Community-0.001004/t/data/qiime_w_missing.txt
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Bio-Community-0.001004/t/data/unifrac_qualitative.txt
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Bio-Community-0.001004/t/data/rep_set_tax_assignments.txt
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Bio-Community-0.001004/t/data/qiime_single_community.txt
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Bio-Community-0.001004/t/data/table_extra_line.txt
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Bio-Community-0.001004/t/data/taxonomy
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Bio-Community-0.001004/t/data/taxonomy/ncbi_small_nodes.dmp
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Bio-Community-0.001004/t/data/taxonomy/silva_SSURef_108_tax_silva_trunc.fasta
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Bio-Community-0.001004/t/data/taxonomy/ncbi_small_names.dmp
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Bio-Community-0.001004/t/data/taxonomy/greengenes_taxonomy_16S_candiv_gg_2011_1.txt
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Bio-Community-0.001004/t/Role
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Bio-Community-0.001004/t/Role/Locked.t
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Bio-Community-0.001004/t/Role/TestPRNG.pm
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Bio-Community-0.001004/t/Role/TestTable.pm
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Bio-Community-0.001004/t/Role/PRNG.t
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Bio-Community-0.001004/t/Role/Table.t
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Bio-Community-0.001004/t/Role/TestLocked.pm
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Entering Bio-Community-0.001004
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Checking configure dependencies from META.json
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Checking if you have Module::Build 0.42 ... Yes (0.4222)
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Checking if you have ExtUtils::Install 1.46 ... Yes (2.04)
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Running Build.PL
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Configuring Bio-Community-0.001004 ... Checking prerequisites...
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recommends:
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* Math::GSL::SF is not installed
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ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
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of the modules indicated above before proceeding with this installation
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Created MYMETA.yml and MYMETA.json
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Creating new 'Build' script for 'Bio-Community' version '0.001004'
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Checking dependencies from MYMETA.json ...
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Checking if you have Scalar::Util 0 ... Yes (1.47)
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Checking if you have Method::Signatures 0 ... Yes (20170211)
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Checking if you have MooseX::StrictConstructor 0 ... Yes (0.21)
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Checking if you have MooseX::NonMoose 0 ... Yes (0.26)
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Checking if you have Moose 0 ... Yes (2.2004)
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Checking if you have Test::Number::Delta 0 ... Yes (1.06)
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Checking if you have Bio::Root::Version 1.006922 ... Yes (1.007001)
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Checking if you have Math::Random::MT 0 ... Yes (1.17)
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Checking if you have Getopt::Euclid v0.4.3 ... Yes (0.4.5)
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Checking if you have Tie::IxHash 0 ... Yes (1.23)
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Checking if you have Module::Runtime 0 ... Yes (0.014)
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Checking if you have Parallel::Iterator 0 ... Yes (1.00)
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Checking if you have PerlIO::eol 0 ... Yes (0.16)
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Checking if you have JSON::XS 0 ... Yes (3.01)
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Checking if you have Hash::Util 0 ... Yes (0.22)
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Checking if you have DateTime 0 ... Yes (1.42)
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OK
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Building and testing Bio-Community-0.001004 ... Building Bio-Community
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Alpha.t ............................ ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Community.t ........................ ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/IO.t ............................... ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/IO/Driver/biom.t ................... ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/IO/Driver/gaas.t ................... ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/IO/Driver/generic.t ................ ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/IO/Driver/qiime.t .................. ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/IO/Driver/unifrac.t ................ ok
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t/IO/FormatGuesser.t ................. ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/IO/weights.t ....................... ok
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t/Member.t ........................... ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Meta.t ............................. ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Meta/Beta.t ........................ ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Meta/Gamma.t ....................... ok
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# Failed test 'use t::Role::TestLocked;'
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# at t/Role/Locked.t line 5.
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# Tried to use 't::Role::TestLocked'.
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# Error: Can't locate t/Role/TestLocked.pm in @INC (you may need to install the t::Role::TestLocked module) (@INC contains: /home/ryan/.cpanm/work/1493203741.28143/Bio-Community-0.001004/blib/lib /home/ryan/.cpanm/work/1493203741.28143/Bio-Community-0.001004/blib/arch /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0 /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0) at t/Role/Locked.t line 5.
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# BEGIN failed--compilation aborted at t/Role/Locked.t line 5.
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Can't locate object method "new" via package "t::Role::TestLocked" (perhaps you forgot to load "t::Role::TestLocked"?) at t/Role/Locked.t line 15.
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# Tests were run but no plan was declared and done_testing() was not seen.
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# Looks like your test exited with 255 just after 1.
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t/Role/Locked.t ......................
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Dubious, test returned 255 (wstat 65280, 0xff00)
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Failed 1/1 subtests
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# Failed test 'use t::Role::TestPRNG;'
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# at t/Role/PRNG.t line 5.
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# Tried to use 't::Role::TestPRNG'.
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# Error: Can't locate t/Role/TestPRNG.pm in @INC (you may need to install the t::Role::TestPRNG module) (@INC contains: /home/ryan/.cpanm/work/1493203741.28143/Bio-Community-0.001004/blib/lib /home/ryan/.cpanm/work/1493203741.28143/Bio-Community-0.001004/blib/arch /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0 /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0) at t/Role/PRNG.t line 5.
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# BEGIN failed--compilation aborted at t/Role/PRNG.t line 5.
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Can't locate object method "new" via package "t::Role::PRNG" (perhaps you forgot to load "t::Role::PRNG"?) at t/Role/PRNG.t line 15.
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# Tests were run but no plan was declared and done_testing() was not seen.
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# Looks like your test exited with 255 just after 1.
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t/Role/PRNG.t ........................
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Dubious, test returned 255 (wstat 65280, 0xff00)
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Failed 1/1 subtests
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# Failed test 'use t::Role::TestTable;'
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# at t/Role/Table.t line 5.
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# Tried to use 't::Role::TestTable'.
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# Error: Can't locate t/Role/TestTable.pm in @INC (you may need to install the t::Role::TestTable module) (@INC contains: /home/ryan/.cpanm/work/1493203741.28143/Bio-Community-0.001004/blib/lib /home/ryan/.cpanm/work/1493203741.28143/Bio-Community-0.001004/blib/arch /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0 /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0/x86_64-linux /home/ryan/perl5/perlbrew/perls/perl-blead/lib/5.26.0) at t/Role/Table.t line 5.
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# BEGIN failed--compilation aborted at t/Role/Table.t line 5.
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Can't locate object method "new" via package "t::Role::TestTable" (perhaps you forgot to load "t::Role::TestTable"?) at t/Role/Table.t line 17.
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# Tests were run but no plan was declared and done_testing() was not seen.
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# Looks like your test exited with 25 just after 1.
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t/Role/Table.t .......................
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Dubious, test returned 25 (wstat 6400, 0x1900)
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Failed 1/1 subtests
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Tools/Rarefier.t ................... ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Tools/RepresentativeIdConverter.t .. ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Tools/Sampler.t .................... ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Tools/ShrapnelCleaner.t ............ ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Tools/Summarizer.t ................. ok
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Any::Moose is deprecated. Please use Moo instead at /home/ryan/perl5/perlbrew/perls/perl-blead/lib/site_perl/5.26.0/Method/Signatures.pm line 1293.
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t/Tools/Transformer.t ................ ok
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Test Summary Report
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-------------------
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t/Role/Locked.t (Wstat: 65280 Tests: 1 Failed: 1)
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Failed test: 1
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Non-zero exit status: 255
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Parse errors: No plan found in TAP output
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t/Role/PRNG.t (Wstat: 65280 Tests: 1 Failed: 1)
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Failed test: 1
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Non-zero exit status: 255
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Parse errors: No plan found in TAP output
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t/Role/Table.t (Wstat: 6400 Tests: 1 Failed: 1)
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Failed test: 1
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Non-zero exit status: 25
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Parse errors: No plan found in TAP output
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Files=23, Tests=7588, 22 wallclock secs ( 0.41 usr 0.02 sys + 7.72 cusr 0.38 csys = 8.53 CPU)
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Result: FAIL
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Failed 3/23 test programs. 3/7588 subtests failed.
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! Installing Bio::Community::Tools::RepresentativeIdConverter failed. See /home/ryan/.cpanm/work/1493203741.28143/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose Bio::Community::Tools::RepresentativeIdConverter] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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