cpantestlogs/Bio::Chado::Schema::General::Project_genfailure.log
2017-05-02 18:44:36 -07:00

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==========
cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
Work directory is /home/ryan/.cpanm/work/1493604393.18871
You have make /usr/bin/make
You have LWP 6.26
You have /bin/tar: tar (GNU tar) 1.29
Copyright (C) 2015 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Written by John Gilmore and Jay Fenlason.
You have /usr/bin/unzip
Searching Bio::Chado::Schema::General::Project () on cpanmetadb ...
Unpacking Bio-Chado-Schema-0.06001.tar.gz
--> Working on Bio::Chado::Schema::General::Project
Fetching http://www.cpan.org/authors/id/R/RB/RBUELS/Bio-Chado-Schema-0.06001.tar.gz ... OK
Bio-Chado-Schema-0.06001
Bio-Chado-Schema-0.06001/LICENSE
Bio-Chado-Schema-0.06001/META.yml
Bio-Chado-Schema-0.06001/README
Bio-Chado-Schema-0.06001/Build.PL
Bio-Chado-Schema-0.06001/Changes
Bio-Chado-Schema-0.06001/MANIFEST
Bio-Chado-Schema-0.06001/t
Bio-Chado-Schema-0.06001/t/010_organism.t
Bio-Chado-Schema-0.06001/t/001_basics.t
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Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Expression/ExpressionPub.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Expression/Eimage.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Expression/Expression.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/Stockcollection.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/Stock.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockRelationshipPub.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockcollectionStock.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockCvterm.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/Stockcollectionprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockRelationshipCvterm.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockGenotype.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/Stockprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockPub.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockpropPub.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockDbxref.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Stock/StockRelationship.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/QuantificationRelationship.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/StudypropFeature.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/AcquisitionRelationship.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Biomaterialprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Quantification.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Channel.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Control.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/BiomaterialRelationship.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Mageml.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/BiomaterialTreatment.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Magedocumentation.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/StudyAssay.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Studyfactor.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Acquisition.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Assayprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/AssayBiomaterial.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Protocolparam.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Studyfactorvalue.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Quantificationprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Elementresult.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Element.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/BiomaterialDbxref.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Studydesignprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Assay.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Studydesign.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Arraydesign.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Arraydesignprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Studyprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Treatment.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Acquisitionprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Study.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Biomaterial.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/ElementRelationship.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/ElementresultRelationship.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/Protocol.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Mage/AssayProject.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/Cvtermsynonym.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CvPathCount.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CvtermDbxref.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CvLeaf.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CvCvtermCount.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/Cvtermprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/StatsPathsToRoot.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CvCvtermCountWithObs.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/Cvterm.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CvLinkCount.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/Cv.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CommonDescendantCvterm.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CvtermRelationship.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CvRoot.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/Dbxrefprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/Cvtermpath.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/Cv/CommonAncestorCvterm.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdReagent.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentContact.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentPub.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentPhenotype.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperiment.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdReagentprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentStockDbxref.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentProtocol.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdProtocolReagent.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentGenotype.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdReagentRelationship.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentProject.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdGeolocation.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentStock.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdGeolocationprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentStockprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentDbxref.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdExperimentprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdProtocolprop.pm
Bio-Chado-Schema-0.06001/lib/Bio/Chado/Schema/NaturalDiversity/NdProtocol.pm
Entering Bio-Chado-Schema-0.06001
Checking configure dependencies from META.yml
Checking if you have Module::Build 0.38 ... Yes (0.4222)
Checking if you have ExtUtils::Install 1.46 ... Yes (2.04)
Running Build.PL
Configuring Bio-Chado-Schema-0.06001 ... Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Bio-Chado-Schema' version '0.06001'
Checking dependencies from MYMETA.json ...
Checking if you have Carp 0 ... Yes (1.38)
Checking if you have Carp::Clan 6.00 ... Yes (6.06)
Checking if you have DBIx::Class::Tree::NestedSet 0.07 ... Yes (0.10)
Checking if you have Test::Exception 0.27 ... Yes (0.43)
Checking if you have Bio::Root::Version 1.005002 ... Yes (1.007001)
Checking if you have SQL::Translator 0.11005 ... Yes (0.11021)
Checking if you have DBD::SQLite 1.14 ... Yes (1.54)
Checking if you have Test::More 0 ... Yes (1.302083)
Checking if you have DBIx::Class 0.08111 ... Yes (0.082840)
OK
Building and testing Bio-Chado-Schema-0.06001 ... Building Bio-Chado-Schema
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Util. Can't find source_name method. Is Bio::Chado::Schema::Util really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Test. Can't find source_name method. Is Bio::Chado::Schema::Test really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
t/001_basics.t ............ ok
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Util. Can't find source_name method. Is Bio::Chado::Schema::Util really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Test. Can't find source_name method. Is Bio::Chado::Schema::Test really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
t/010_organism.t .......... ok
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Util. Can't find source_name method. Is Bio::Chado::Schema::Util really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Test. Can't find source_name method. Is Bio::Chado::Schema::Test really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
DBIx::Class::ResultSource::_minimal_valueset_satisfying_constraint(): Unable to satisfy requested constraint 'dbxref_c1', missing values for column(s): 'version' at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema/Cv/Cvterm.pm line 1856
# Looks like your test exited with 2 just after 10.
t/Cv/010_cvterm.t .........
Dubious, test returned 2 (wstat 512, 0x200)
Failed 6/16 subtests
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Util. Can't find source_name method. Is Bio::Chado::Schema::Util really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Test. Can't find source_name method. Is Bio::Chado::Schema::Test really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
t/Phylogeny/phylonode.t ... ok
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Util. Can't find source_name method. Is Bio::Chado::Schema::Util really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
DBIx::Class::Schema::load_classes(): Failed to load Bio::Chado::Schema::Test. Can't find source_name method. Is Bio::Chado::Schema::Test really a full DBIC result class? Fix it, move it elsewhere, or make your load_classes call more specific. at /home/ryan/.cpanm/work/1493604393.18871/Bio-Chado-Schema-0.06001/blib/lib/Bio/Chado/Schema.pm line 11
t/Sequence/010_feature.t .. ok
Test Summary Report
-------------------
t/Cv/010_cvterm.t (Wstat: 512 Tests: 10 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 16 tests but ran 10.
Files=5, Tests=42, 5 wallclock secs ( 0.01 usr 0.00 sys + 4.69 cusr 0.14 csys = 4.84 CPU)
Result: FAIL
Failed 1/5 test programs. 0/42 subtests failed.
! Installing Bio::Chado::Schema::General::Project failed. See /home/ryan/.cpanm/work/1493604393.18871/build.log for details. Retry with --force to force install it.
FAIL
Command [cpanm --reinstall --verbose Bio::Chado::Schema::General::Project] terminated with exit code 1 ($? = 256) under the following perl environment:
Command terminated with non-zero status.
Current perl:
Name: perl-blead
Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
Compiled at: Mar 30 2017 03:10:09
perlbrew:
version: 0.78
ENV:
PERLBREW_ROOT: /home/ryan/perl5/perlbrew
PERLBREW_HOME: /home/ryan/.perlbrew
PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man