112 lines
4.1 KiB
Text
112 lines
4.1 KiB
Text
perl-blead
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==========
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cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
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Work directory is /home/ryan/.cpanm/work/1493168146.30874
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You have make /usr/bin/make
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You have LWP 6.26
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You have /bin/tar: tar (GNU tar) 1.29
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Copyright (C) 2015 Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
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This is free software: you are free to change and redistribute it.
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There is NO WARRANTY, to the extent permitted by law.
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Written by John Gilmore and Jay Fenlason.
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You have /usr/bin/unzip
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Searching AlignAid () on cpanmetadb ...
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Unpacking AlignAid-v0.0.2.tar.gz
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--> Working on AlignAid
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Fetching http://www.cpan.org/authors/id/D/DM/DMESSINA/AlignAid-v0.0.2.tar.gz ... OK
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AlignAid-v0.0.2/
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AlignAid-v0.0.2/Build.PL
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AlignAid-v0.0.2/Changes
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AlignAid-v0.0.2/lib/
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AlignAid-v0.0.2/lib/AlignAid.pm
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AlignAid-v0.0.2/LICENSE
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AlignAid-v0.0.2/Makefile.PL
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AlignAid-v0.0.2/MANIFEST
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AlignAid-v0.0.2/MANIFEST.SKIP
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AlignAid-v0.0.2/META.yml
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AlignAid-v0.0.2/README
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AlignAid-v0.0.2/t/
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AlignAid-v0.0.2/t/00.load.t
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AlignAid-v0.0.2/t/AlignAid.t
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AlignAid-v0.0.2/t/pod-coverage.t
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AlignAid-v0.0.2/t/pod.t
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AlignAid-v0.0.2/t/test.fa
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AlignAid-v0.0.2/t/test.fa.xnd
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AlignAid-v0.0.2/t/test.fa.xns
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AlignAid-v0.0.2/t/test.fa.xnt
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AlignAid-v0.0.2/t/test1.fa
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AlignAid-v0.0.2/t/test1.fa.xnd
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AlignAid-v0.0.2/t/test1.fa.xns
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AlignAid-v0.0.2/t/test1.fa.xnt
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Entering AlignAid-v0.0.2
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Checking configure dependencies from META.yml
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Checking if you have Module::Build 0.38 ... Yes (0.4222)
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Checking if you have ExtUtils::Install 1.46 ... Yes (2.04)
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Running Build.PL
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Configuring AlignAid-v0.0.2 ... Checking prerequisites...
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recommends:
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* BPdeluxe is not installed
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* PP is not installed
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ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
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of the modules indicated above before proceeding with this installation
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Created MYMETA.yml and MYMETA.json
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Creating new 'Build' script for 'AlignAid' version 'v0.0.2'
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Checking dependencies from MYMETA.json ...
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Checking if you have version 0 ... Yes (0.9918)
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Checking if you have Bio::SeqIO 0 ... Yes (undef)
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Checking if you have Test::More 0 ... Yes (1.302078)
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OK
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Building and testing AlignAid-v0.0.2 ... Building AlignAid
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could not load PP -- submitting to LSF or PBS queues will not be possible
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at t/00.load.t line 4.
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# Testing AlignAid 0.0.2
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t/00.load.t ....... ok
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could not load PP -- submitting to LSF or PBS queues will not be possible
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at t/AlignAid.t line 14.
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sh: 1: /home/ryan/.cpanm/work/1493168146.30874/AlignAid-v0.0.2/t/test1.fa: Permission denied
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# Failed test 'submit a singleton blast job'
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# at t/AlignAid.t line 35.
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Use of uninitialized value $_ in unlink at t/AlignAid.t line 81.
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# Looks like you planned 10 tests but ran 3.
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# Looks like you failed 1 test of 3 run.
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t/AlignAid.t ......
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Dubious, test returned 1 (wstat 256, 0x100)
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Failed 8/10 subtests
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could not load PP -- submitting to LSF or PBS queues will not be possible
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at (eval 9) line 1.
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t/pod-coverage.t .. ok
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t/pod.t ........... ok
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Test Summary Report
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-------------------
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t/AlignAid.t (Wstat: 256 Tests: 3 Failed: 1)
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Failed test: 3
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Non-zero exit status: 1
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Parse errors: Bad plan. You planned 10 tests but ran 3.
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Files=4, Tests=6, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.20 cusr 0.01 csys = 0.23 CPU)
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Result: FAIL
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Failed 1/4 test programs. 1/6 subtests failed.
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! Installing AlignAid failed. See /home/ryan/.cpanm/work/1493168146.30874/build.log for details. Retry with --force to force install it.
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FAIL
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Command [cpanm --reinstall --verbose AlignAid] terminated with exit code 1 ($? = 256) under the following perl environment:
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Command terminated with non-zero status.
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Current perl:
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Name: perl-blead
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Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
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Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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Compiled at: Mar 30 2017 03:10:09
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perlbrew:
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version: 0.78
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ENV:
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PERLBREW_ROOT: /home/ryan/perl5/perlbrew
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PERLBREW_HOME: /home/ryan/.perlbrew
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PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
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PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man
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