cpantestlogs/Ace_genfailure.log
2017-05-02 18:44:36 -07:00

390 lines
16 KiB
Text

perl-blead
==========
cpanm (App::cpanminus) 1.7043 on perl 5.026000 built for x86_64-linux
Work directory is /home/ryan/.cpanm/work/1493365235.30347
You have make /usr/bin/make
You have LWP 6.26
You have /bin/tar: tar (GNU tar) 1.29
Copyright (C) 2015 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Written by John Gilmore and Jay Fenlason.
You have /usr/bin/unzip
Searching Ace () on cpanmetadb ...
Unpacking AcePerl-1.92.tar.gz
--> Working on Ace
Fetching http://www.cpan.org/authors/id/L/LD/LDS/AcePerl-1.92.tar.gz ... OK
AcePerl-1.92/
AcePerl-1.92/t/
AcePerl-1.92/t/update.t
AcePerl-1.92/t/object.t
AcePerl-1.92/t/basic.t
AcePerl-1.92/t/sequence.t
AcePerl-1.92/Ace/
AcePerl-1.92/Ace/Model.pm
AcePerl-1.92/Ace/Object/
AcePerl-1.92/Ace/Object/Wormbase.pm
AcePerl-1.92/Ace/Iterator.pm
AcePerl-1.92/Ace/Browser/
AcePerl-1.92/Ace/Browser/AceSubs.pm
AcePerl-1.92/Ace/Browser/GeneSubs.pm
AcePerl-1.92/Ace/Browser/SearchSubs.pm
AcePerl-1.92/Ace/Browser/TreeSubs.pm
AcePerl-1.92/Ace/Browser/SiteDefs.pm
AcePerl-1.92/Ace/Object.pm
AcePerl-1.92/Ace/Local.pm
AcePerl-1.92/Ace/Sequence/
AcePerl-1.92/Ace/Sequence/Multi.pm
AcePerl-1.92/Ace/Sequence/Homol.pm
AcePerl-1.92/Ace/Sequence/GappedAlignment.pm
AcePerl-1.92/Ace/Sequence/FeatureList.pm
AcePerl-1.92/Ace/Sequence/Feature.pm
AcePerl-1.92/Ace/Sequence/Gene.pm
AcePerl-1.92/Ace/Sequence/Transcript.pm
AcePerl-1.92/Ace/Graphics/
AcePerl-1.92/Ace/Graphics/GlyphFactory.pm
AcePerl-1.92/Ace/Graphics/Fk.pm
AcePerl-1.92/Ace/Graphics/Glyph/
AcePerl-1.92/Ace/Graphics/Glyph/ex.pm
AcePerl-1.92/Ace/Graphics/Glyph/toomany.pm
AcePerl-1.92/Ace/Graphics/Glyph/line.pm
AcePerl-1.92/Ace/Graphics/Glyph/crossbox.pm
AcePerl-1.92/Ace/Graphics/Glyph/group.pm
AcePerl-1.92/Ace/Graphics/Glyph/span.pm
AcePerl-1.92/Ace/Graphics/Glyph/box.pm
AcePerl-1.92/Ace/Graphics/Glyph/graded_segments.pm
AcePerl-1.92/Ace/Graphics/Glyph/dot.pm
AcePerl-1.92/Ace/Graphics/Glyph/primers.pm
AcePerl-1.92/Ace/Graphics/Glyph/segments.pm
AcePerl-1.92/Ace/Graphics/Glyph/transcript.pm
AcePerl-1.92/Ace/Graphics/Glyph/anchored_arrow.pm
AcePerl-1.92/Ace/Graphics/Glyph/triangle.pm
AcePerl-1.92/Ace/Graphics/Glyph/arrow.pm
AcePerl-1.92/Ace/Graphics/Glyph.pm
AcePerl-1.92/Ace/Graphics/Track.pm
AcePerl-1.92/Ace/Graphics/Panel.pm
AcePerl-1.92/Ace/Sequence.pm
AcePerl-1.92/Ace/SocketServer.pm
AcePerl-1.92/GFF/
AcePerl-1.92/GFF/Filehandle.pm
AcePerl-1.92/RPC/
AcePerl-1.92/RPC/RPC.h
AcePerl-1.92/RPC/RPC.pm
AcePerl-1.92/RPC/RPC.xs
AcePerl-1.92/RPC/Makefile.PL
AcePerl-1.92/docs/
AcePerl-1.92/docs/ACE_SERVER_TRAPS.HOWTO.html
AcePerl-1.92/docs/README
AcePerl-1.92/docs/ACEDB.HOWTO
AcePerl-1.92/docs/GFF_Spec.html
AcePerl-1.92/docs/ACE_SERVER_TRAPS.HOWTO
AcePerl-1.92/docs/NEW_DB.HOWTO
AcePerl-1.92/util/
AcePerl-1.92/util/install.PLS
AcePerl-1.92/util/ace.PLS
AcePerl-1.92/install.PLS
AcePerl-1.92/README.ACEBROWSER
AcePerl-1.92/README
AcePerl-1.92/make_docs.PLS
AcePerl-1.92/acebrowser/
AcePerl-1.92/acebrowser/conf/
AcePerl-1.92/acebrowser/conf/moviedb.pm
AcePerl-1.92/acebrowser/conf/default.pm
AcePerl-1.92/acebrowser/conf/simple.pm
AcePerl-1.92/acebrowser/conf/elegans.pm
AcePerl-1.92/acebrowser/htdocs/
AcePerl-1.92/acebrowser/htdocs/ico/
AcePerl-1.92/acebrowser/htdocs/ico/image2.gif
AcePerl-1.92/acebrowser/htdocs/ico/a_up.gif
AcePerl-1.92/acebrowser/htdocs/ico/a_world.gif
AcePerl-1.92/acebrowser/htdocs/ico/cyrarrw.gif
AcePerl-1.92/acebrowser/htdocs/ico/a_down.gif
AcePerl-1.92/acebrowser/htdocs/ico/quill.gif
AcePerl-1.92/acebrowser/htdocs/ico/text.gif
AcePerl-1.92/acebrowser/htdocs/ico/arrows/
AcePerl-1.92/acebrowser/htdocs/ico/arrows/cyrarrw.gif
AcePerl-1.92/acebrowser/htdocs/ico/arrows/cylarrw.gif
AcePerl-1.92/acebrowser/htdocs/ico/arrows/spacer.gif
AcePerl-1.92/acebrowser/htdocs/ico/arrows/uarrw.gif
AcePerl-1.92/acebrowser/htdocs/ico/triangle_down.gif
AcePerl-1.92/acebrowser/htdocs/ico/cylarrw.gif
AcePerl-1.92/acebrowser/htdocs/ico/triangle_right.gif
AcePerl-1.92/acebrowser/htdocs/ico/unknown.gif
AcePerl-1.92/acebrowser/htdocs/ico/search.gif
AcePerl-1.92/acebrowser/htdocs/ico/a_zoomout.gif
AcePerl-1.92/acebrowser/htdocs/ico/layout.gif
AcePerl-1.92/acebrowser/htdocs/ico/a_zoomin.gif
AcePerl-1.92/acebrowser/htdocs/ico/spacer.gif
AcePerl-1.92/acebrowser/htdocs/ico/right_arrow.gif
AcePerl-1.92/acebrowser/htdocs/ico/link.gif
AcePerl-1.92/acebrowser/htdocs/stylesheets/
AcePerl-1.92/acebrowser/htdocs/stylesheets/aceperl.css
AcePerl-1.92/acebrowser/htdocs/stylesheets/elegans.css
AcePerl-1.92/acebrowser/htdocs/stylesheets/moviedb.css
AcePerl-1.92/acebrowser/htdocs/index.html
AcePerl-1.92/acebrowser/cgi-bin/
AcePerl-1.92/acebrowser/cgi-bin/misc/
AcePerl-1.92/acebrowser/cgi-bin/misc/feedback
AcePerl-1.92/acebrowser/cgi-bin/misc/privacy
AcePerl-1.92/acebrowser/cgi-bin/generic/
AcePerl-1.92/acebrowser/cgi-bin/generic/pic
AcePerl-1.92/acebrowser/cgi-bin/generic/xml
AcePerl-1.92/acebrowser/cgi-bin/generic/tree
AcePerl-1.92/acebrowser/cgi-bin/generic/model
AcePerl-1.92/acebrowser/cgi-bin/generic/acetable
AcePerl-1.92/acebrowser/cgi-bin/moviedb/
AcePerl-1.92/acebrowser/cgi-bin/moviedb/movie
AcePerl-1.92/acebrowser/cgi-bin/moviedb/person
AcePerl-1.92/acebrowser/cgi-bin/searches/
AcePerl-1.92/acebrowser/cgi-bin/searches/text
AcePerl-1.92/acebrowser/cgi-bin/searches/basic
AcePerl-1.92/acebrowser/cgi-bin/searches/query
AcePerl-1.92/acebrowser/cgi-bin/searches/browser
AcePerl-1.92/Freesubs/
AcePerl-1.92/Freesubs/Freesubs.pm
AcePerl-1.92/Freesubs/Freesubs.xs
AcePerl-1.92/Freesubs/Makefile.PL
AcePerl-1.92/acelib/
AcePerl-1.92/acelib/wh/
AcePerl-1.92/acelib/wh/regular.h
AcePerl-1.92/acelib/wh/mydirent.h
AcePerl-1.92/acelib/wh/liste.h
AcePerl-1.92/acelib/wh/menu_.h
AcePerl-1.92/acelib/wh/aceversion.h
AcePerl-1.92/acelib/wh/call.h
AcePerl-1.92/acelib/wh/bump.h
AcePerl-1.92/acelib/wh/dict.h
AcePerl-1.92/acelib/wh/freeout.h
AcePerl-1.92/acelib/wh/heap.h
AcePerl-1.92/acelib/wh/help.h
AcePerl-1.92/acelib/wh/menu.h
AcePerl-1.92/acelib/wh/acedb.h
AcePerl-1.92/acelib/wh/regression.h
AcePerl-1.92/acelib/wh/help_.h
AcePerl-1.92/acelib/wh/aceclient.h
AcePerl-1.92/acelib/wh/mystdlib.h
AcePerl-1.92/acelib/wh/array.h
AcePerl-1.92/acelib/wh/version.h
AcePerl-1.92/acelib/wh/keyset.h
AcePerl-1.92/acelib/wh/bump_.h
AcePerl-1.92/acelib/wh/mytime.h
AcePerl-1.92/acelib/Makefile
AcePerl-1.92/acelib/randsubs.c
AcePerl-1.92/acelib/texthelp.c
AcePerl-1.92/acelib/wmake/
AcePerl-1.92/acelib/wmake/_DEF
AcePerl-1.92/acelib/wmake/IRIX_DEF
AcePerl-1.92/acelib/wmake/POSIX_4_DEF
AcePerl-1.92/acelib/wmake/LINUX_MAC_4_DEF
AcePerl-1.92/acelib/wmake/LINUX_4_DEF
AcePerl-1.92/acelib/wmake/ALPHA_4_GCC_DEF
AcePerl-1.92/acelib/wmake/SOLARIS_4_NEW_DEF
AcePerl-1.92/acelib/wmake/SGI_DEF
AcePerl-1.92/acelib/wmake/LINUX_DEF
AcePerl-1.92/acelib/wmake/POSIX_4_GCC_DEF
AcePerl-1.92/acelib/wmake/LINUX_LIBC5_4_DEF
AcePerl-1.92/acelib/wmake/ALPHA_4_NEW_DEF
AcePerl-1.92/acelib/wmake/IBM_4_DEF
AcePerl-1.92/acelib/wmake/SOLARIS_DEF
AcePerl-1.92/acelib/wmake/HPUX_DEF
AcePerl-1.92/acelib/wmake/ALPHA_G3_DEF
AcePerl-1.92/acelib/wmake/SOLARIS_4_DEF
AcePerl-1.92/acelib/wmake/SGI_4_DEF
AcePerl-1.92/acelib/wmake/SUNOS_DEF
AcePerl-1.92/acelib/wmake/SOLARIS_4_OPT_DEF
AcePerl-1.92/acelib/wmake/INTEL_SOLARIS_4_OPT_DEF
AcePerl-1.92/acelib/wmake/ALPHA_4_OSFV3_DEF
AcePerl-1.92/acelib/wmake/DEC_OSF_DEF
AcePerl-1.92/acelib/wmake/SUN_4_NEW_DEF
AcePerl-1.92/acelib/wmake/ALPHA_4_OPT_DEF
AcePerl-1.92/acelib/wmake/SUN_4_DEF
AcePerl-1.92/acelib/wmake/HP_4_GCC_DEF
AcePerl-1.92/acelib/wmake/SGI_4_GCC_DEF
AcePerl-1.92/acelib/wmake/SGI_4_PURE_DEF
AcePerl-1.92/acelib/wmake/ALPHA_4_DEF
AcePerl-1.92/acelib/wmake/SGI_4_NEW_DEF
AcePerl-1.92/acelib/wmake/SGI_4_IRIX5_DEF
AcePerl-1.92/acelib/wmake/IRIX4_4_DEF
AcePerl-1.92/acelib/wmake/SOLARIS_7_gcc_DEF
AcePerl-1.92/acelib/wmake/SOLARIS_GCC_DEF
AcePerl-1.92/acelib/wmake/ALPHA_CHRONO_4_DEF
AcePerl-1.92/acelib/wmake/SOLARIS_4_RELEASE_DEF
AcePerl-1.92/acelib/filsubs.c
AcePerl-1.92/acelib/aceclientlib.c
AcePerl-1.92/acelib/liste.c
AcePerl-1.92/acelib/helpsubs.c
AcePerl-1.92/acelib/call.c
AcePerl-1.92/acelib/bump.c
AcePerl-1.92/acelib/dict.c
AcePerl-1.92/acelib/freeout.c
AcePerl-1.92/acelib/heap.c
AcePerl-1.92/acelib/rpcace.x
AcePerl-1.92/acelib/menu.c
AcePerl-1.92/acelib/freesubs.c
AcePerl-1.92/acelib/arraysub.c
AcePerl-1.92/acelib/timesubs.c
AcePerl-1.92/acelib/messubs.c
AcePerl-1.92/acelib/memsubs.c
AcePerl-1.92/Makefile.PL
AcePerl-1.92/META.yml
AcePerl-1.92/DISCLAIMER.txt
AcePerl-1.92/typemap
AcePerl-1.92/examples/
AcePerl-1.92/examples/exons.pl
AcePerl-1.92/examples/draw_seqmap.pl
AcePerl-1.92/examples/exons.txt
AcePerl-1.92/examples/README
AcePerl-1.92/examples/sequence.pl
AcePerl-1.92/examples/dump_cdna.pl
AcePerl-1.92/examples/ace.pl
AcePerl-1.92/examples/coauthors.pl
AcePerl-1.92/examples/authors2.pl
AcePerl-1.92/examples/authors.pl
AcePerl-1.92/examples/gif.pl
AcePerl-1.92/examples/upstream2.pl
AcePerl-1.92/examples/upstream.pl
AcePerl-1.92/ChangeLog
AcePerl-1.92/MANIFEST
AcePerl-1.92/Ace.pm
Entering AcePerl-1.92
Checking configure dependencies from META.yml
Running Makefile.PL
Configuring AcePerl-1.92 ...
What do you want to build?
1) Interface to Ace socket server and local databases (pure Perl)
2) The above plus XS optimizations (requires C compiler)
3) The above plus RPC server interface (requires C compiler)
Enter your choice: [1] 1
Do you want to install Ace::Browser? [n] n
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Ace
Writing MYMETA.yml and MYMETA.json
Checking dependencies from MYMETA.json ...
Checking if you have Cache::Cache 1.03 ... Yes (1.08)
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.24)
Checking if you have Digest::MD5 2 ... Yes (2.55)
OK
Building and testing AcePerl-1.92 ... cp Ace/Object/Wormbase.pm blib/lib/Ace/Object/Wormbase.pm
cp Ace/Model.pm blib/lib/Ace/Model.pm
cp Ace/Graphics/Glyph/dot.pm blib/lib/Ace/Graphics/Glyph/dot.pm
cp Ace/Graphics/Glyph/graded_segments.pm blib/lib/Ace/Graphics/Glyph/graded_segments.pm
cp Ace/Sequence.pm blib/lib/Ace/Sequence.pm
AutoSplitting blib/lib/Ace/Sequence.pm (blib/lib/auto/Ace/Sequence)
cp Ace/Sequence/Gene.pm blib/lib/Ace/Sequence/Gene.pm
cp Ace/Object.pm blib/lib/Ace/Object.pm
AutoSplitting blib/lib/Ace/Object.pm (blib/lib/auto/Ace/Object)
cp Ace/Graphics/Glyph/arrow.pm blib/lib/Ace/Graphics/Glyph/arrow.pm
cp Ace/Sequence/Multi.pm blib/lib/Ace/Sequence/Multi.pm
cp Ace/Graphics/Glyph/primers.pm blib/lib/Ace/Graphics/Glyph/primers.pm
cp Ace/Browser/SearchSubs.pm blib/lib/Ace/Browser/SearchSubs.pm
cp Ace/Sequence/Feature.pm blib/lib/Ace/Sequence/Feature.pm
AutoSplitting blib/lib/Ace/Sequence/Feature.pm (blib/lib/auto/Ace/Sequence/Feature)
cp Ace/Local.pm blib/lib/Ace/Local.pm
cp Ace/Graphics/Glyph/line.pm blib/lib/Ace/Graphics/Glyph/line.pm
cp Ace.pm blib/lib/Ace.pm
AutoSplitting blib/lib/Ace.pm (blib/lib/auto/Ace)
cp Ace/Graphics/Glyph/triangle.pm blib/lib/Ace/Graphics/Glyph/triangle.pm
cp Ace/Graphics/Glyph/transcript.pm blib/lib/Ace/Graphics/Glyph/transcript.pm
cp Ace/Sequence/Homol.pm blib/lib/Ace/Sequence/Homol.pm
cp Ace/Graphics/Glyph/crossbox.pm blib/lib/Ace/Graphics/Glyph/crossbox.pm
cp Ace/Graphics/GlyphFactory.pm blib/lib/Ace/Graphics/GlyphFactory.pm
cp Ace/Graphics/Glyph/toomany.pm blib/lib/Ace/Graphics/Glyph/toomany.pm
cp Ace/Graphics/Panel.pm blib/lib/Ace/Graphics/Panel.pm
cp Ace/Browser/TreeSubs.pm blib/lib/Ace/Browser/TreeSubs.pm
cp Ace/Browser/SiteDefs.pm blib/lib/Ace/Browser/SiteDefs.pm
cp Ace/Graphics/Glyph/ex.pm blib/lib/Ace/Graphics/Glyph/ex.pm
cp Ace/Sequence/FeatureList.pm blib/lib/Ace/Sequence/FeatureList.pm
cp Ace/Sequence/GappedAlignment.pm blib/lib/Ace/Sequence/GappedAlignment.pm
cp Ace/Graphics/Glyph/group.pm blib/lib/Ace/Graphics/Glyph/group.pm
cp Ace/Iterator.pm blib/lib/Ace/Iterator.pm
cp Ace/Graphics/Glyph/segments.pm blib/lib/Ace/Graphics/Glyph/segments.pm
cp Ace/Graphics/Glyph/box.pm blib/lib/Ace/Graphics/Glyph/box.pm
cp Ace/Browser/GeneSubs.pm blib/lib/Ace/Browser/GeneSubs.pm
cp Ace/Sequence/Transcript.pm blib/lib/Ace/Sequence/Transcript.pm
cp Ace/Graphics/Track.pm blib/lib/Ace/Graphics/Track.pm
cp Ace/Browser/AceSubs.pm blib/lib/Ace/Browser/AceSubs.pm
cp Ace/Graphics/Glyph/anchored_arrow.pm blib/lib/Ace/Graphics/Glyph/anchored_arrow.pm
cp Ace/Graphics/Glyph/span.pm blib/lib/Ace/Graphics/Glyph/span.pm
cp Ace/Graphics/Glyph.pm blib/lib/Ace/Graphics/Glyph.pm
cp Ace/Graphics/Fk.pm blib/lib/Ace/Graphics/Fk.pm
cp Ace/SocketServer.pm blib/lib/Ace/SocketServer.pm
cp GFF/Filehandle.pm blib/lib/GFF/Filehandle.pm
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" util/ace.PLS util/ace.pl
Extracting ace.pl (with variable substitutions)
cp util/ace.pl blib/script/ace.pl
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/ace.pl
Manifying 1 pod document
Manifying 35 pod documents
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" make_docs.PLS .docs
Creating HTML documentation in docs...
....done!
"/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-Iblib/arch" "-Iblib/lib" util/install.PLS util/install.pl
Extracting install.pl (with variable substitutions)
PERL_DL_NONLAZY=1 "/home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
Waiting for remote acedb regression database to start up. This may take a few minutes.
Couldn't establish connection to database. Aborting tests.
t/basic.t .....
Dubious, test returned 110 (wstat 28160, 0x6e00)
Failed 9/10 subtests
Couldn't establish connection to database. Aborting tests.
t/object.t ....
Dubious, test returned 110 (wstat 28160, 0x6e00)
Failed 35/36 subtests
Couldn't establish connection to database. Aborting tests.
t/sequence.t ..
Dubious, test returned 110 (wstat 28160, 0x6e00)
Failed 53/54 subtests
Couldn't establish connection to database. Aborting tests.
t/update.t ....
Dubious, test returned 110 (wstat 28160, 0x6e00)
Failed 16/17 subtests
Test Summary Report
-------------------
t/basic.t (Wstat: 28160 Tests: 2 Failed: 1)
Failed test: 2
Non-zero exit status: 110
Parse errors: Bad plan. You planned 10 tests but ran 2.
t/object.t (Wstat: 28160 Tests: 2 Failed: 1)
Failed test: 2
Non-zero exit status: 110
Parse errors: Bad plan. You planned 36 tests but ran 2.
t/sequence.t (Wstat: 28160 Tests: 2 Failed: 1)
Failed test: 2
Non-zero exit status: 110
Parse errors: Bad plan. You planned 54 tests but ran 2.
t/update.t (Wstat: 28160 Tests: 2 Failed: 1)
Failed test: 2
Non-zero exit status: 110
Parse errors: Bad plan. You planned 17 tests but ran 2.
Files=4, Tests=8, 523 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.00 csys = 0.10 CPU)
Result: FAIL
Failed 4/4 test programs. 4/8 subtests failed.
Makefile:1032: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 110
! Installing Ace failed. See /home/ryan/.cpanm/work/1493365235.30347/build.log for details. Retry with --force to force install it.
FAIL
Command [cpanm --reinstall --verbose Ace] terminated with exit code 1 ($? = 256) under the following perl environment:
Command terminated with non-zero status.
Current perl:
Name: perl-blead
Path: /home/ryan/perl5/perlbrew/perls/perl-blead/bin/perl
Config: -de -Dprefix=/home/ryan/perl5/perlbrew/perls/perl-blead -Dusedevel -Aeval:scriptdir=/home/ryan/perl5/perlbrew/perls/perl-blead/bin
Compiled at: Mar 30 2017 03:10:09
perlbrew:
version: 0.78
ENV:
PERLBREW_ROOT: /home/ryan/perl5/perlbrew
PERLBREW_HOME: /home/ryan/.perlbrew
PERLBREW_PATH: /home/ryan/perl5/perlbrew/bin:/home/ryan/perl5/perlbrew/perls/perl-blead/bin
PERLBREW_MANPATH: /home/ryan/perl5/perlbrew/perls/perl-blead/man